5LCD
Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006797 | biological_process | polyphosphate metabolic process |
| A | 0008976 | molecular_function | polyphosphate kinase activity |
| A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| B | 0006797 | biological_process | polyphosphate metabolic process |
| B | 0008976 | molecular_function | polyphosphate kinase activity |
| B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| C | 0006797 | biological_process | polyphosphate metabolic process |
| C | 0008976 | molecular_function | polyphosphate kinase activity |
| C | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| D | 0006797 | biological_process | polyphosphate metabolic process |
| D | 0008976 | molecular_function | polyphosphate kinase activity |
| D | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue AMP A 301 |
| Chain | Residue |
| A | PHE91 |
| A | VAL131 |
| A | GLY92 |
| A | VAL93 |
| A | PRO94 |
| A | ARG106 |
| A | ARG122 |
| A | GLU126 |
| A | ASP127 |
| A | VAL130 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue PO4 A 302 |
| Chain | Residue |
| A | ALA67 |
| A | GLY68 |
| A | GLY69 |
| A | LYS70 |
| A | ASP71 |
| A | ARG182 |
| A | SO4306 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 303 |
| Chain | Residue |
| A | GLN97 |
| A | ARG101 |
| B | ARG113 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 304 |
| Chain | Residue |
| A | LYS29 |
| A | ASN232 |
| A | TRP233 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 305 |
| Chain | Residue |
| A | LYS231 |
| A | TRP233 |
| A | HOH416 |
| B | LYS231 |
| B | SO4304 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 306 |
| Chain | Residue |
| A | ARG75 |
| A | ARG182 |
| A | LYS188 |
| A | LYS191 |
| A | PO4302 |
| site_id | AC7 |
| Number of Residues | 11 |
| Details | binding site for residue AMP B 301 |
| Chain | Residue |
| B | PHE91 |
| B | GLY92 |
| B | VAL93 |
| B | PRO94 |
| B | ARG106 |
| B | ARG122 |
| B | GLU126 |
| B | ASP127 |
| B | VAL130 |
| B | VAL131 |
| B | HOH416 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue PO4 B 302 |
| Chain | Residue |
| B | ALA67 |
| B | GLY68 |
| B | GLY69 |
| B | LYS70 |
| B | ASP71 |
| B | ARG182 |
| B | SO4303 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 303 |
| Chain | Residue |
| B | ARG75 |
| B | LYS188 |
| B | LYS191 |
| B | PO4302 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 304 |
| Chain | Residue |
| A | SO4305 |
| B | LYS231 |
| B | TRP233 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 305 |
| Chain | Residue |
| B | LYS29 |
| B | LYS231 |
| B | ASN232 |
| B | TRP233 |
| site_id | AD3 |
| Number of Residues | 12 |
| Details | binding site for residue AMP C 301 |
| Chain | Residue |
| C | PHE91 |
| C | GLY92 |
| C | VAL93 |
| C | PRO94 |
| C | ARG106 |
| C | ARG122 |
| C | GLU126 |
| C | ASP127 |
| C | VAL130 |
| C | VAL131 |
| C | ARG193 |
| C | MG302 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue MG C 302 |
| Chain | Residue |
| C | ARG122 |
| C | AMP301 |
| site_id | AD5 |
| Number of Residues | 7 |
| Details | binding site for residue PO4 C 303 |
| Chain | Residue |
| C | ALA67 |
| C | GLY68 |
| C | GLY69 |
| C | LYS70 |
| C | ASP71 |
| C | ARG182 |
| C | SO4304 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 C 304 |
| Chain | Residue |
| C | ARG75 |
| C | ARG182 |
| C | LYS188 |
| C | LYS191 |
| C | PO4303 |
| site_id | AD7 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 305 |
| Chain | Residue |
| C | ARG132 |
| C | ALA212 |
| C | ARG215 |
| site_id | AD8 |
| Number of Residues | 10 |
| Details | binding site for residue AMP D 301 |
| Chain | Residue |
| D | VAL130 |
| D | VAL131 |
| D | PHE91 |
| D | GLY92 |
| D | VAL93 |
| D | PRO94 |
| D | ARG106 |
| D | ARG122 |
| D | GLU126 |
| D | ASP127 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue PO4 D 302 |
| Chain | Residue |
| D | ALA67 |
| D | GLY68 |
| D | GLY69 |
| D | LYS70 |
| D | ASP71 |
| D | ARG182 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 303 |
| Chain | Residue |
| C | ARG113 |
| D | GLN97 |
| D | ARG101 |
