5KOB
Crystal structure of a peptide deformylase from Burkholderia xenovorans
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006412 | biological_process | translation |
A | 0016787 | molecular_function | hydrolase activity |
A | 0018206 | biological_process | peptidyl-methionine modification |
A | 0042586 | molecular_function | peptide deformylase activity |
A | 0046872 | molecular_function | metal ion binding |
B | 0006412 | biological_process | translation |
B | 0016787 | molecular_function | hydrolase activity |
B | 0018206 | biological_process | peptidyl-methionine modification |
B | 0042586 | molecular_function | peptide deformylase activity |
B | 0046872 | molecular_function | metal ion binding |
C | 0006412 | biological_process | translation |
C | 0016787 | molecular_function | hydrolase activity |
C | 0018206 | biological_process | peptidyl-methionine modification |
C | 0042586 | molecular_function | peptide deformylase activity |
C | 0046872 | molecular_function | metal ion binding |
D | 0006412 | biological_process | translation |
D | 0016787 | molecular_function | hydrolase activity |
D | 0018206 | biological_process | peptidyl-methionine modification |
D | 0042586 | molecular_function | peptide deformylase activity |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue FE2 A 201 |
Chain | Residue |
A | CYS99 |
A | HIS141 |
A | HIS145 |
A | HOH306 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue FMT A 202 |
Chain | Residue |
A | TYR69 |
A | GLU97 |
A | GLY98 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue FMT A 203 |
Chain | Residue |
A | ARG68 |
A | TYR69 |
A | GLY98 |
A | CYS99 |
A | GLY44 |
A | ALA45 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue FMT A 204 |
Chain | Residue |
A | GLN140 |
A | CYS143 |
A | ASP144 |
A | ILE147 |
A | HOH325 |
A | HOH351 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue FMT A 205 |
Chain | Residue |
A | TRP96 |
A | LEU167 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue FMT A 206 |
Chain | Residue |
A | GLN57 |
A | ASN82 |
A | HOH368 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue FMT A 207 |
Chain | Residue |
A | ARG3 |
A | GLU4 |
A | HOH358 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue FE2 B 201 |
Chain | Residue |
B | CYS99 |
B | HIS141 |
B | HIS145 |
B | HOH324 |
B | HOH402 |
site_id | AC9 |
Number of Residues | 9 |
Details | binding site for residue FMT B 202 |
Chain | Residue |
B | ILE16 |
B | ALA17 |
B | ASP18 |
B | GLN57 |
B | HOH371 |
B | HOH393 |
B | HOH420 |
C | LYS149 |
C | ARG154 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue FMT B 203 |
Chain | Residue |
B | GLY44 |
B | ALA45 |
B | GLY46 |
B | GLY98 |
B | HOH382 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue FMT B 204 |
Chain | Residue |
B | GLN140 |
B | CYS143 |
B | ASP144 |
B | HOH372 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue FMT B 205 |
Chain | Residue |
B | HIS118 |
B | ASP128 |
B | HOH311 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue FMT B 206 |
Chain | Residue |
B | GLN57 |
B | ASN82 |
B | HOH391 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue FMT B 207 |
Chain | Residue |
A | GLU27 |
B | ARG111 |
B | GLN140 |
B | HOH372 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue EDO B 208 |
Chain | Residue |
B | ASP128 |
B | ARG129 |
B | VAL130 |
B | HOH302 |
B | HOH322 |
B | HOH377 |
C | ARG129 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue FE2 C 201 |
Chain | Residue |
C | GLN51 |
C | CYS99 |
C | HIS141 |
C | HIS145 |
C | HOH305 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue FMT C 202 |
Chain | Residue |
C | GLY44 |
C | ALA45 |
C | ARG68 |
C | TYR69 |
C | GLY98 |
C | CYS99 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue FMT C 203 |
Chain | Residue |
C | TYR69 |
C | GLY98 |
C | VAL138 |
site_id | AE1 |
Number of Residues | 7 |
Details | binding site for residue FMT C 204 |
Chain | Residue |
C | ARG68 |
C | CYS99 |
C | PRO103 |
C | GLY104 |
C | ARG106 |
C | FMT207 |
C | HOH327 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue FMT C 205 |
Chain | Residue |
C | HIS29 |
C | GLN122 |
C | HOH357 |
site_id | AE3 |
Number of Residues | 2 |
Details | binding site for residue FMT C 206 |
Chain | Residue |
C | HIS22 |
C | PHE23 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue FMT C 207 |
Chain | Residue |
C | ARG68 |
C | PRO103 |
C | FMT204 |
C | HOH353 |
site_id | AE5 |
Number of Residues | 2 |
Details | binding site for residue FMT C 208 |
Chain | Residue |
C | GLY64 |
C | HIS65 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue FMT C 209 |
Chain | Residue |
C | ASN82 |
C | PHE120 |
C | HOH365 |
C | HOH384 |
C | HOH391 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue FMT C 210 |
Chain | Residue |
C | GLN90 |
C | ASP91 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue FE2 D 201 |
Chain | Residue |
D | CYS99 |
D | HIS141 |
D | HIS145 |
D | HOH341 |
site_id | AE9 |
Number of Residues | 7 |
Details | binding site for residue FMT D 202 |
Chain | Residue |
D | CYS99 |
D | PRO103 |
D | GLY104 |
D | ARG106 |
D | HOH304 |
D | HOH330 |
D | HOH409 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue FMT D 203 |
Chain | Residue |
D | ASP10 |
D | PRO11 |
D | ARG12 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue FMT D 204 |
Chain | Residue |
D | ILE85 |
D | HOH307 |
D | HOH319 |
D | HOH358 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue EDO D 205 |
Chain | Residue |
D | GLU97 |
D | GLY98 |
D | HIS141 |
D | HOH376 |
site_id | AF4 |
Number of Residues | 3 |
Details | binding site for residue EDO D 206 |
Chain | Residue |
A | PRO74 |
D | TYR123 |
D | HOH367 |