5KLI
Rhodobacter sphaeroides bc1 with stigmatellin and antimycin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005886 | cellular_component | plasma membrane |
A | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
A | 0009055 | molecular_function | electron transfer activity |
A | 0016020 | cellular_component | membrane |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0022904 | biological_process | respiratory electron transport chain |
A | 0045275 | cellular_component | respiratory chain complex III |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
A | 1902600 | biological_process | proton transmembrane transport |
B | 0005886 | cellular_component | plasma membrane |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
C | 0005886 | cellular_component | plasma membrane |
C | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
C | 0016020 | cellular_component | membrane |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
C | 1902600 | biological_process | proton transmembrane transport |
E | 0005886 | cellular_component | plasma membrane |
E | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
E | 0009055 | molecular_function | electron transfer activity |
E | 0016020 | cellular_component | membrane |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0022904 | biological_process | respiratory electron transport chain |
E | 0045275 | cellular_component | respiratory chain complex III |
E | 0046872 | molecular_function | metal ion binding |
E | 0070469 | cellular_component | respirasome |
E | 1902600 | biological_process | proton transmembrane transport |
F | 0005886 | cellular_component | plasma membrane |
F | 0009055 | molecular_function | electron transfer activity |
F | 0020037 | molecular_function | heme binding |
F | 0046872 | molecular_function | metal ion binding |
F | 0070469 | cellular_component | respirasome |
G | 0005886 | cellular_component | plasma membrane |
G | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
G | 0016020 | cellular_component | membrane |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0046872 | molecular_function | metal ion binding |
G | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
G | 1902600 | biological_process | proton transmembrane transport |
K | 0005886 | cellular_component | plasma membrane |
K | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
K | 0009055 | molecular_function | electron transfer activity |
K | 0016020 | cellular_component | membrane |
K | 0016491 | molecular_function | oxidoreductase activity |
K | 0022904 | biological_process | respiratory electron transport chain |
K | 0045275 | cellular_component | respiratory chain complex III |
K | 0046872 | molecular_function | metal ion binding |
K | 0070469 | cellular_component | respirasome |
K | 1902600 | biological_process | proton transmembrane transport |
L | 0005886 | cellular_component | plasma membrane |
L | 0009055 | molecular_function | electron transfer activity |
L | 0020037 | molecular_function | heme binding |
L | 0046872 | molecular_function | metal ion binding |
L | 0070469 | cellular_component | respirasome |
M | 0005886 | cellular_component | plasma membrane |
M | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
M | 0016020 | cellular_component | membrane |
M | 0016491 | molecular_function | oxidoreductase activity |
M | 0046872 | molecular_function | metal ion binding |
M | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
M | 1902600 | biological_process | proton transmembrane transport |
O | 0005886 | cellular_component | plasma membrane |
O | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
O | 0009055 | molecular_function | electron transfer activity |
O | 0016020 | cellular_component | membrane |
O | 0016491 | molecular_function | oxidoreductase activity |
O | 0022904 | biological_process | respiratory electron transport chain |
O | 0045275 | cellular_component | respiratory chain complex III |
O | 0046872 | molecular_function | metal ion binding |
O | 0070469 | cellular_component | respirasome |
O | 1902600 | biological_process | proton transmembrane transport |
P | 0005886 | cellular_component | plasma membrane |
P | 0009055 | molecular_function | electron transfer activity |
P | 0020037 | molecular_function | heme binding |
P | 0046872 | molecular_function | metal ion binding |
P | 0070469 | cellular_component | respirasome |
Q | 0005886 | cellular_component | plasma membrane |
Q | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
Q | 0016020 | cellular_component | membrane |
Q | 0016491 | molecular_function | oxidoreductase activity |
Q | 0046872 | molecular_function | metal ion binding |
Q | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
Q | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue HEM A 1001 |
Chain | Residue |
A | GLN58 |
A | TYR147 |
A | LEU149 |
A | PRO150 |
A | HIS198 |
A | TYR199 |
A | PRO202 |
A | TYR297 |
A | GLY62 |
A | ILE63 |
A | LEU65 |
A | ARG94 |
A | HIS97 |
A | ALA101 |
A | THR142 |
A | GLY146 |
site_id | AC2 |
Number of Residues | 17 |
Details | binding site for residue HEM A 1002 |
Chain | Residue |
A | TRP45 |
A | GLY48 |
A | LEU51 |
A | PHE104 |
A | HIS111 |
A | ARG114 |
A | SER120 |
A | ARG125 |
A | GLY132 |
A | MET133 |
A | ILE135 |
A | HIS212 |
A | PHE216 |
A | GLY220 |
A | ASN221 |
A | ASN222 |
A | ANJ1004 |
site_id | AC3 |
Number of Residues | 15 |
Details | binding site for residue SMA A 1003 |
Chain | Residue |
A | MET140 |
A | PHE144 |
A | MET145 |
A | MET154 |
A | GLY158 |
A | VAL161 |
A | ILE162 |
A | LEU197 |
A | PRO294 |
A | GLU295 |
A | PHE298 |
A | TYR302 |
A | MET336 |
A | PHE337 |
G | HIS152 |
site_id | AC4 |
Number of Residues | 12 |
Details | binding site for residue ANJ A 1004 |
Chain | Residue |
A | TRP45 |
A | VAL49 |
A | ALA52 |
A | ALA206 |
A | VAL209 |
A | ILE213 |
A | PHE216 |
A | ASN221 |
A | PHE244 |
A | PHE248 |
A | ASP252 |
A | HEM1002 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue LOP A 1006 |
Chain | Residue |
A | ILE106 |
A | PHE113 |
A | TYR117 |
A | TYR118 |
A | ARG358 |
A | PHE367 |
site_id | AC6 |
Number of Residues | 15 |
Details | binding site for residue HEC B 1001 |
Chain | Residue |
B | VAL35 |
B | CYS36 |
B | CYS39 |
B | HIS40 |
B | ASN96 |
B | PRO98 |
B | MET103 |
B | ARG107 |
B | TYR130 |
B | LEU135 |
B | PHE160 |
B | ILE183 |
B | ALA184 |
B | MET185 |
B | PRO188 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue SR B 1002 |
Chain | Residue |
B | ASP8 |
B | VAL9 |
B | GLU14 |
B | GLU129 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue FES C 1001 |
Chain | Residue |
C | CYS129 |
C | HIS131 |
C | LEU132 |
C | CYS149 |
C | CYS151 |
C | HIS152 |
C | SER154 |
site_id | AC9 |
Number of Residues | 17 |
Details | binding site for residue HEM E 1001 |
Chain | Residue |
E | PHE104 |
E | THR142 |
E | GLY146 |
E | TYR147 |
E | LEU149 |
E | PRO150 |
E | HIS198 |
E | TYR199 |
E | PRO202 |
E | TYR297 |
E | GLN58 |
E | GLY62 |
E | ILE63 |
E | LEU65 |
E | ARG94 |
E | HIS97 |
E | ALA101 |
site_id | AD1 |
Number of Residues | 18 |
Details | binding site for residue HEM E 1002 |
Chain | Residue |
E | TRP45 |
E | GLY48 |
E | LEU51 |
E | PHE104 |
E | HIS111 |
E | ILE112 |
E | ARG114 |
E | SER120 |
E | ARG125 |
E | GLY132 |
E | MET133 |
E | ILE135 |
E | HIS212 |
E | PHE216 |
E | GLY220 |
E | ASN221 |
E | ASN222 |
E | ANJ1004 |
site_id | AD2 |
Number of Residues | 14 |
Details | binding site for residue SMA E 1003 |
Chain | Residue |
C | CYS151 |
C | HIS152 |
E | MET140 |
E | PHE144 |
E | MET154 |
E | GLY158 |
E | VAL161 |
E | ILE162 |
E | PRO294 |
E | GLU295 |
E | PHE298 |
E | TYR302 |
E | MET336 |
E | PHE337 |
site_id | AD3 |
Number of Residues | 11 |
Details | binding site for residue ANJ E 1004 |
Chain | Residue |
E | LEU41 |
E | TRP45 |
E | VAL49 |
E | ALA52 |
E | VAL209 |
E | ILE213 |
E | ASN221 |
E | PHE244 |
E | PHE248 |
E | ASP252 |
E | HEM1002 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue LOP E 1005 |
Chain | Residue |
E | MET44 |
E | PHE113 |
E | TYR117 |
E | TYR118 |
E | VAL262 |
E | ARG358 |
E | TRP368 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue SR F 1002 |
Chain | Residue |
F | ASP8 |
F | VAL9 |
F | GLU14 |
F | GLU129 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue FES G 1001 |
Chain | Residue |
G | CYS129 |
G | HIS131 |
G | LEU132 |
G | CYS149 |
G | CYS151 |
G | HIS152 |
G | SER154 |
site_id | AD7 |
Number of Residues | 15 |
Details | binding site for residue HEM K 1001 |
Chain | Residue |
K | LEU55 |
K | GLN58 |
K | GLY62 |
K | LEU65 |
K | ALA66 |
K | ARG94 |
K | HIS97 |
K | THR142 |
K | GLY146 |
K | TYR147 |
K | LEU149 |
K | PRO150 |
K | HIS198 |
K | TYR199 |
K | PRO202 |
site_id | AD8 |
Number of Residues | 19 |
Details | binding site for residue HEM K 1002 |
Chain | Residue |
K | TRP45 |
K | GLY48 |
K | LEU51 |
K | ALA52 |
K | PHE104 |
K | HIS111 |
K | ARG114 |
K | SER120 |
K | ARG125 |
K | THR128 |
K | GLY132 |
K | MET133 |
K | ILE135 |
K | HIS212 |
K | PHE216 |
K | GLY220 |
K | ASN221 |
K | ASN222 |
K | ANJ1004 |
site_id | AD9 |
Number of Residues | 16 |
Details | binding site for residue SMA K 1003 |
Chain | Residue |
K | PHE144 |
K | MET145 |
K | MET154 |
K | GLY158 |
K | VAL161 |
K | ILE162 |
K | PHE194 |
K | LEU197 |
K | PRO294 |
K | GLU295 |
K | PHE298 |
K | TYR302 |
K | MET336 |
K | PHE337 |
Q | CYS151 |
Q | HIS152 |
site_id | AE1 |
Number of Residues | 12 |
Details | binding site for residue ANJ K 1004 |
Chain | Residue |
K | LEU41 |
K | TRP45 |
K | VAL49 |
K | ALA52 |
K | VAL209 |
K | ILE213 |
K | PHE216 |
K | ASN221 |
K | PHE244 |
K | PHE248 |
K | ASP252 |
K | HEM1002 |
site_id | AE2 |
Number of Residues | 2 |
Details | binding site for residue SR K 1005 |
Chain | Residue |
E | ASP311 |
K | ASP311 |
site_id | AE3 |
Number of Residues | 9 |
Details | binding site for residue LOP K 1006 |
Chain | Residue |
K | ASN42 |
K | TYR109 |
K | LEU110 |
K | PHE113 |
K | TYR117 |
K | TYR118 |
K | ARG358 |
K | PHE367 |
K | TRP368 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue SR L 1002 |
Chain | Residue |
L | ASP8 |
L | VAL9 |
L | GLU14 |
L | GLU129 |
site_id | AE5 |
Number of Residues | 7 |
Details | binding site for residue FES M 1001 |
Chain | Residue |
M | CYS129 |
M | HIS131 |
M | LEU132 |
M | CYS149 |
M | CYS151 |
M | HIS152 |
M | SER154 |
site_id | AE6 |
Number of Residues | 17 |
Details | binding site for residue HEM O 1001 |
Chain | Residue |
O | LEU55 |
O | GLN58 |
O | GLY62 |
O | ILE63 |
O | LEU65 |
O | ARG94 |
O | HIS97 |
O | ALA101 |
O | THR142 |
O | GLY146 |
O | TYR147 |
O | LEU149 |
O | PRO150 |
O | HIS198 |
O | TYR199 |
O | PRO202 |
O | TYR297 |
site_id | AE7 |
Number of Residues | 17 |
Details | binding site for residue HEM O 1002 |
Chain | Residue |
O | TRP45 |
O | GLY48 |
O | LEU51 |
O | PHE104 |
O | HIS111 |
O | ARG114 |
O | SER120 |
O | ARG125 |
O | GLY132 |
O | MET133 |
O | ILE135 |
O | HIS212 |
O | PHE216 |
O | GLY220 |
O | ASN221 |
O | ASN222 |
O | ANJ1004 |
site_id | AE8 |
Number of Residues | 13 |
Details | binding site for residue SMA O 1003 |
Chain | Residue |
M | CYS151 |
M | HIS152 |
O | PHE144 |
O | MET154 |
O | GLY158 |
O | VAL161 |
O | ILE162 |
O | LEU197 |
O | PRO294 |
O | GLU295 |
O | PHE298 |
O | TYR302 |
O | MET336 |
site_id | AE9 |
Number of Residues | 12 |
Details | binding site for residue ANJ O 1004 |
Chain | Residue |
O | LEU41 |
O | TRP45 |
O | VAL49 |
O | ALA52 |
O | ILE213 |
O | PHE216 |
O | ASN221 |
O | PHE244 |
O | PHE248 |
O | LYS251 |
O | ASP252 |
O | HEM1002 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue LOP O 1005 |
Chain | Residue |
O | LEU110 |
O | TYR117 |
O | TYR118 |
O | VAL262 |
O | ARG358 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue SR P 1002 |
Chain | Residue |
P | ASP8 |
P | VAL9 |
P | GLU14 |
P | GLU129 |
site_id | AF3 |
Number of Residues | 7 |
Details | binding site for residue FES Q 1001 |
Chain | Residue |
Q | CYS129 |
Q | HIS131 |
Q | LEU132 |
Q | CYS149 |
Q | CYS151 |
Q | HIS152 |
Q | SER154 |
site_id | AF4 |
Number of Residues | 18 |
Details | binding site for Di-peptide HEC F 1001 and CYS F 36 |
Chain | Residue |
F | VAL31 |
F | TYR32 |
F | VAL35 |
F | ALA37 |
F | ALA38 |
F | CYS39 |
F | HIS40 |
F | ASN96 |
F | PRO98 |
F | MET103 |
F | ARG107 |
F | TYR130 |
F | LEU135 |
F | PHE160 |
F | ILE183 |
F | ALA184 |
F | MET185 |
F | PRO188 |
site_id | AF5 |
Number of Residues | 20 |
Details | binding site for Di-peptide HEC F 1001 and CYS F 39 |
Chain | Residue |
F | VAL35 |
F | CYS36 |
F | ALA37 |
F | ALA38 |
F | HIS40 |
F | SER92 |
F | ALA93 |
F | LEU94 |
F | ASN96 |
F | ALA97 |
F | PRO98 |
F | MET103 |
F | ARG107 |
F | TYR130 |
F | LEU135 |
F | PHE160 |
F | ILE183 |
F | ALA184 |
F | MET185 |
F | PRO188 |
site_id | AF6 |
Number of Residues | 20 |
Details | binding site for Di-peptide HEC L 1001 and CYS L 39 |
Chain | Residue |
A | SER233 |
L | VAL35 |
L | CYS36 |
L | ALA37 |
L | ALA38 |
L | HIS40 |
L | SER92 |
L | ALA93 |
L | LEU94 |
L | ASN96 |
L | ALA97 |
L | PRO98 |
L | MET103 |
L | ARG107 |
L | TYR130 |
L | LEU135 |
L | PHE160 |
L | ILE183 |
L | ALA184 |
L | MET185 |
site_id | AF7 |
Number of Residues | 19 |
Details | binding site for Di-peptide HEC L 1001 and CYS L 36 |
Chain | Residue |
A | SER233 |
L | VAL31 |
L | TYR32 |
L | VAL35 |
L | ALA37 |
L | ALA38 |
L | CYS39 |
L | HIS40 |
L | LEU94 |
L | ASN96 |
L | PRO98 |
L | MET103 |
L | ARG107 |
L | TYR130 |
L | LEU135 |
L | PHE160 |
L | ILE183 |
L | ALA184 |
L | MET185 |
site_id | AF8 |
Number of Residues | 19 |
Details | binding site for Di-peptide HEC P 1001 and CYS P 39 |
Chain | Residue |
P | VAL35 |
P | CYS36 |
P | ALA37 |
P | ALA38 |
P | HIS40 |
P | SER92 |
P | ALA93 |
P | LEU94 |
P | ASN96 |
P | ALA97 |
P | PRO98 |
P | MET103 |
P | ARG107 |
P | TYR130 |
P | LEU135 |
P | PHE160 |
P | ILE183 |
P | ALA184 |
P | MET185 |
site_id | AF9 |
Number of Residues | 17 |
Details | binding site for Di-peptide HEC P 1001 and CYS P 36 |
Chain | Residue |
P | VAL31 |
P | TYR32 |
P | VAL35 |
P | ALA37 |
P | ALA38 |
P | CYS39 |
P | HIS40 |
P | ASN96 |
P | PRO98 |
P | MET103 |
P | ARG107 |
P | TYR130 |
P | LEU135 |
P | PHE160 |
P | ILE183 |
P | ALA184 |
P | MET185 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 80 |
Details | TRANSMEM: Helical => ECO:0000255 |
Chain | Residue | Details |
C | LEU15-ILE35 | |
E | PRO409-GLU445 | |
K | SER2-VAL49 | |
K | ARG114-TRP129 | |
K | HIS217-ASP252 | |
K | PRO347-LYS364 | |
K | PRO409-GLU445 | |
O | SER2-VAL49 | |
O | ARG114-TRP129 | |
O | HIS217-ASP252 | |
O | PRO347-LYS364 | |
G | LEU15-ILE35 | |
O | PRO409-GLU445 | |
M | LEU15-ILE35 | |
Q | LEU15-ILE35 | |
A | PRO409-GLU445 | |
E | SER2-VAL49 | |
E | ARG114-TRP129 | |
E | HIS217-ASP252 | |
E | PRO347-LYS364 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00628 |
Chain | Residue | Details |
C | CYS129 | |
M | HIS131 | |
M | CYS149 | |
M | HIS152 | |
Q | CYS129 | |
Q | HIS131 | |
Q | CYS149 | |
Q | HIS152 | |
K | VAL50-MET67 | |
K | TYR95-PHE113 | |
K | ILE130-LEU149 | |
C | HIS131 | |
K | PHE194-PHE216 | |
K | VAL253-MET270 | |
K | PHE330-VAL346 | |
K | ILE365-ALA382 | |
K | TYR389-LEU408 | |
O | VAL50-MET67 | |
O | TYR95-PHE113 | |
O | ILE130-LEU149 | |
O | PHE194-PHE216 | |
O | VAL253-MET270 | |
C | CYS149 | |
O | PHE330-VAL346 | |
O | ILE365-ALA382 | |
O | TYR389-LEU408 | |
C | HIS152 | |
G | CYS129 | |
G | HIS131 | |
G | CYS149 | |
G | HIS152 | |
M | CYS129 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | BINDING: axial binding residue |
Chain | Residue | Details |
B | HIS40 | |
K | PRO150-ARG193 | |
K | PRO271-LYS329 | |
K | GLN383-PRO388 | |
O | HIS68-ARG94 | |
O | PRO150-ARG193 | |
O | PRO271-LYS329 | |
O | GLN383-PRO388 | |
F | HIS40 | |
L | HIS40 | |
P | HIS40 | |
E | HIS68-ARG94 | |
E | PRO150-ARG193 | |
E | PRO271-LYS329 | |
E | GLN383-PRO388 | |
K | HIS68-ARG94 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000255|PROSITE-ProRule:PRU00433 |
Chain | Residue | Details |
B | MET185 | |
K | HIS111 | |
K | HIS198 | |
K | HIS212 | |
O | HIS97 | |
O | HIS111 | |
O | HIS198 | |
O | HIS212 | |
F | MET185 | |
L | MET185 | |
P | MET185 | |
E | HIS97 | |
E | HIS111 | |
E | HIS198 | |
E | HIS212 | |
K | HIS97 |