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5K16

Crystal structure of free Ubiquitin-specific protease 12

Functional Information from GO Data
ChainGOidnamespacecontents
A0004197molecular_functioncysteine-type endopeptidase activity
A0004843molecular_functioncysteine-type deubiquitinase activity
A0005515molecular_functionprotein binding
A0005575cellular_componentcellular_component
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006508biological_processproteolysis
A0008234molecular_functioncysteine-type peptidase activity
A0016579biological_processprotein deubiquitination
A0046872molecular_functionmetal ion binding
A0101005molecular_functiondeubiquitinase activity
B0004197molecular_functioncysteine-type endopeptidase activity
B0004843molecular_functioncysteine-type deubiquitinase activity
B0005515molecular_functionprotein binding
B0005575cellular_componentcellular_component
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006508biological_processproteolysis
B0008234molecular_functioncysteine-type peptidase activity
B0016579biological_processprotein deubiquitination
B0046872molecular_functionmetal ion binding
B0101005molecular_functiondeubiquitinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS186
ACYS189
ACYS233
ACYS236

site_idAC2
Number of Residues3
Detailsbinding site for residue GOL A 402
ChainResidue
AILE192
ASER193
ASER194

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS233
BCYS236
BCYS186
BCYS189

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL B 402
ChainResidue
BILE107
BTHR108
BARG111

Functional Information from PROSITE/UniProt
site_idPS00972
Number of Residues16
DetailsUSP_1 Ubiquitin specific protease (USP) domain signature 1. GLvnfGNtCYCNSvLQ
ChainResidueDetails
AGLY40-GLN55

site_idPS00973
Number of Residues19
DetailsUSP_2 Ubiquitin specific protease (USP) domain signature 2. YdLvAVvvHcGsgpnr.GHY
ChainResidueDetails
ATYR300-TYR318

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:27373336
ChainResidueDetails
ACYS48
BCYS48

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10092, ECO:0000255|PROSITE-ProRule:PRU10093
ChainResidueDetails
AHIS317
BHIS317

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:5K16, ECO:0007744|PDB:5K1A, ECO:0007744|PDB:5K1B, ECO:0007744|PDB:5L8W
ChainResidueDetails
ACYS186
BCYS186

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0007744|PDB:5K16, ECO:0007744|PDB:5K1A, ECO:0007744|PDB:5K1B, ECO:0007744|PDB:5K1C, ECO:0007744|PDB:5L8W
ChainResidueDetails
ACYS189
ACYS233
ACYS236
BCYS189
BCYS233
BCYS236

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PDB entries from 2024-07-24

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