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5JY6

Structures of Streptococcus agalactiae GBS GAPDH in different enzymatic states

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
A0005737cellular_componentcytoplasm
A0006006biological_processglucose metabolic process
A0006096biological_processglycolytic process
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0050661molecular_functionNADP binding
A0051287molecular_functionNAD binding
B0000166molecular_functionnucleotide binding
B0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
B0005737cellular_componentcytoplasm
B0006006biological_processglucose metabolic process
B0006096biological_processglycolytic process
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0050661molecular_functionNADP binding
B0051287molecular_functionNAD binding
C0000166molecular_functionnucleotide binding
C0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C0005737cellular_componentcytoplasm
C0006006biological_processglucose metabolic process
C0006096biological_processglycolytic process
C0016491molecular_functionoxidoreductase activity
C0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C0050661molecular_functionNADP binding
C0051287molecular_functionNAD binding
D0000166molecular_functionnucleotide binding
D0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D0005737cellular_componentcytoplasm
D0006006biological_processglucose metabolic process
D0006096biological_processglycolytic process
D0016491molecular_functionoxidoreductase activity
D0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D0050661molecular_functionNADP binding
D0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue NAD A 401
ChainResidue
AASN8
ATHR97
AGLY98
APHE99
APHE100
ATHR121
AALA122
ACYS152
AASN316
ATYR320
AHOH506
AGLY9
AHOH546
AHOH547
AHOH550
AHOH552
AHOH574
AHOH578
AHOH593
AHOH606
CPRO191
CHOH512
AGLY11
AARG12
AILE13
AASP34
ALEU35
AARG78
AALA96

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AILE21
AVAL24
AVAL27
AHOH556
AHOH623

site_idAC3
Number of Residues32
Detailsbinding site for residue NAD B 401
ChainResidue
BASN8
BGLY9
BGLY11
BARG12
BILE13
BASP34
BLEU35
BARG78
BALA96
BTHR97
BGLY98
BPHE99
BPHE100
BTHR121
BALA122
BCYS152
BASN316
BTYR320
BHOH526
BHOH537
BHOH549
BHOH553
BHOH572
BHOH584
BHOH591
BHOH592
BHOH603
BHOH612
BHOH618
BHOH636
DPRO191
DHOH537

site_idAC4
Number of Residues4
Detailsbinding site for residue MG B 402
ChainResidue
BILE21
BVAL24
BVAL27
BHOH640

site_idAC5
Number of Residues27
Detailsbinding site for residue NAD C 401
ChainResidue
APRO191
AHOH569
CASN8
CGLY9
CGLY11
CARG12
CILE13
CASP34
CLEU35
CARG78
CALA96
CTHR97
CGLY98
CPHE99
CPHE100
CTHR121
CALA122
CCYS152
CASN316
CTYR320
CHOH513
CHOH538
CHOH556
CHOH557
CHOH561
CHOH564
CHOH575

site_idAC6
Number of Residues4
Detailsbinding site for residue MG C 402
ChainResidue
CVAL27
CHOH579
CILE21
CVAL24

site_idAC7
Number of Residues30
Detailsbinding site for residue NAD D 401
ChainResidue
BPRO191
BHOH532
DASN8
DGLY9
DGLY11
DARG12
DILE13
DASP34
DLEU35
DARG78
DALA96
DTHR97
DGLY98
DPHE99
DPHE100
DTHR121
DALA122
DCYS152
DASN316
DTYR320
DHOH503
DHOH559
DHOH567
DHOH583
DHOH589
DHOH606
DHOH616
DHOH620
DHOH623
DHOH627

site_idAC8
Number of Residues4
Detailsbinding site for residue MG D 402
ChainResidue
DILE21
DVAL24
DVAL27
DHOH648

Functional Information from PROSITE/UniProt
site_idPS00071
Number of Residues8
DetailsGAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL
ChainResidueDetails
AALA150-LEU157

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PDB entries from 2024-09-11

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