5JWY
Structure of lipid phosphate phosphatase PgpB complex with PE
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000810 | molecular_function | diacylglycerol diphosphate phosphatase activity |
A | 0005886 | cellular_component | plasma membrane |
A | 0006655 | biological_process | phosphatidylglycerol biosynthetic process |
A | 0008195 | molecular_function | phosphatidate phosphatase activity |
A | 0008962 | molecular_function | phosphatidylglycerophosphatase activity |
A | 0009252 | biological_process | peptidoglycan biosynthetic process |
A | 0009279 | cellular_component | cell outer membrane |
A | 0009395 | biological_process | phospholipid catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0046474 | biological_process | glycerophospholipid biosynthetic process |
A | 0050380 | molecular_function | undecaprenyl-diphosphatase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue 46E A 301 |
Chain | Residue |
A | GLN50 |
A | VAL88 |
A | GLY89 |
A | LYS93 |
A | PRO160 |
A | PHE166 |
A | SER169 |
A | TRP170 |
A | LEU222 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 111 |
Details | TRANSMEM: Helical => ECO:0000269|PubMed:24821770 |
Chain | Residue | Details |
A | ARG2-ILE24 | |
A | ILE55-TRP66 | |
A | ILE72-SER94 | |
A | GLY162-GLY176 | |
A | ARG183-LEU202 | |
A | PRO209-ARG232 |
site_id | SWS_FT_FI2 |
Number of Residues | 100 |
Details | TOPO_DOM: Periplasmic => ECO:0000305|PubMed:24821770 |
Chain | Residue | Details |
A | SER25-VAL54 | |
A | TRP95-SER161 | |
A | LEU203-TRP208 |
site_id | SWS_FT_FI3 |
Number of Residues | 30 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000305|PubMed:24821770 |
Chain | Residue | Details |
A | CYS67-ARG71 | |
A | LEU177-ARG182 | |
A | ILE233-SER254 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | ACT_SITE: Proton donor; for a subset of substrates => ECO:0000269|PubMed:27405756 |
Chain | Residue | Details |
A | HIS163 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:27405756 |
Chain | Residue | Details |
A | HIS207 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | SITE: Stabilizes the active site histidine for nucleophilic attack => ECO:0000305|PubMed:27405756 |
Chain | Residue | Details |
A | ASP211 |