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5JWF

Crystal structure of Porphyromonas gingivalis DPP11

Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0006508biological_processproteolysis
A0008233molecular_functionpeptidase activity
A0008236molecular_functionserine-type peptidase activity
A0008239molecular_functiondipeptidyl-peptidase activity
A0009986cellular_componentcell surface
A0016787molecular_functionhydrolase activity
A0042277molecular_functionpeptide binding
A0043171biological_processpeptide catabolic process
A0048588biological_processdevelopmental cell growth
A0070009molecular_functionserine-type aminopeptidase activity
B0004177molecular_functionaminopeptidase activity
B0006508biological_processproteolysis
B0008233molecular_functionpeptidase activity
B0008236molecular_functionserine-type peptidase activity
B0008239molecular_functiondipeptidyl-peptidase activity
B0009986cellular_componentcell surface
B0016787molecular_functionhydrolase activity
B0042277molecular_functionpeptide binding
B0043171biological_processpeptide catabolic process
B0048588biological_processdevelopmental cell growth
B0070009molecular_functionserine-type aminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GOL B 801
ChainResidue
BASP297
BARG301
BMET396
BGLU467
BHOH913
BHOH932

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL B 802
ChainResidue
BLYS254
BPHE124
BLYS194
BPRO253

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL B 803
ChainResidue
BASN218
BTRP219
BPHE671
BASP672

site_idAC4
Number of Residues4
Detailsbinding site for residue PGO B 804
ChainResidue
BARG391
BTYR394
BLEU542
BHOH988

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Charge relay system","evidences":[{"source":"UniProtKB","id":"V5YM14","evidenceCode":"ECO:0000250"},{"source":"PubMed","id":"26057589","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Charge relay system","evidences":[{"source":"UniProtKB","id":"V5YM14","evidenceCode":"ECO:0000250"},{"source":"PubMed","id":"21896480","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"26057589","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Is essential for the Asp/Glu P1 specificity of DPP11; involved in the recognition of the Asp/Glu residue at the P1 position of substrate peptides","evidences":[{"source":"PubMed","id":"26057589","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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