5JWF
Crystal structure of Porphyromonas gingivalis DPP11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-11 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.953 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 103.181, 117.216, 148.354 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.563 - 2.400 |
R-factor | 0.2102 |
Rwork | 0.208 |
R-free | 0.25950 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.680 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 91.972 | 45.563 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.026 | 1.224 | |
Number of reflections | 91479 | ||
<I/σ(I)> | 12.3 | 23.2 | 0.6 |
Completeness [%] | 99.7 | 96.6 | 99.4 |
Redundancy | 5.6 | 4.9 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 275 | 0.12M Alcohols, Buffer system 3 pH 8.5, 40% v/v Glycerol, 20% w/v PEG 4000 |