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5JK0

Crystal structure of XerH site-specific recombinase bound to difH substrate: pre-cleavage complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0005737cellular_componentcytoplasm
A0006310biological_processDNA recombination
A0007059biological_processchromosome segregation
A0009037molecular_functiontyrosine-based site-specific recombinase activity
A0015074biological_processDNA integration
A0051301biological_processcell division
B0003677molecular_functionDNA binding
B0005737cellular_componentcytoplasm
B0006310biological_processDNA recombination
B0007059biological_processchromosome segregation
B0009037molecular_functiontyrosine-based site-specific recombinase activity
B0015074biological_processDNA integration
B0051301biological_processcell division
C0003677molecular_functionDNA binding
C0005737cellular_componentcytoplasm
C0006310biological_processDNA recombination
C0007059biological_processchromosome segregation
C0009037molecular_functiontyrosine-based site-specific recombinase activity
C0015074biological_processDNA integration
C0051301biological_processcell division
D0003677molecular_functionDNA binding
D0005737cellular_componentcytoplasm
D0006310biological_processDNA recombination
D0007059biological_processchromosome segregation
D0009037molecular_functiontyrosine-based site-specific recombinase activity
D0015074biological_processDNA integration
D0051301biological_processcell division
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue GOL A 401
ChainResidue
AGLN56
AHOH580
AHOH601
CLEU184
CPHE209

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 402
ChainResidue
ATYR232
ALEU261

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 403
ChainResidue
ALYS88
APHE98
ATYR85
APHE86

site_idAC4
Number of Residues2
Detailsbinding site for residue CL A 404
ChainResidue
ALEU326
CLEU326

site_idAC5
Number of Residues3
Detailsbinding site for residue GOL B 401
ChainResidue
BASP140
BHOH598
DLYS141

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL B 402
ChainResidue
BTHR28
BLEU30
BSER31
BASN32
BHOH535
CSER114

site_idAC7
Number of Residues3
Detailsbinding site for residue GOL B 403
ChainResidue
BTYR267
BGLN278
BHOH584

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO B 404
ChainResidue
BGLN38
BASN39
CLYS88
CTYR116

site_idAC9
Number of Residues4
Detailsbinding site for residue PEG B 405
ChainResidue
BARG21
BARG24
BLEU48
BASN49

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO C 401
ChainResidue
AASN154
AHOH532
CTYR25
CTYR138
CGLN142
CHOH557

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO C 402
ChainResidue
CASN73
CTHR74
CLEU77
CPRO78
CHOH534
FDA9
FHOH107

site_idAD3
Number of Residues2
Detailsbinding site for residue EDO D 401
ChainResidue
DLYS81
DGLU84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01246
ChainResidueDetails
AARG213
ALYS239
AHIS309
AARG312
AHIS335
BARG213
BLYS239
BHIS309
BARG312
BHIS335
CARG213
CLYS239
CHIS309
CARG312
CHIS335
DARG213
DLYS239
DHIS309
DARG312
DHIS335

site_idSWS_FT_FI2
Number of Residues4
DetailsACT_SITE: O-(3'-phospho-DNA)-tyrosine intermediate => ECO:0000255|PROSITE-ProRule:PRU01246
ChainResidueDetails
ATYR344
BTYR344
CTYR344
DTYR344

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PDB entries from 2024-06-12

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