5JJI
Rho transcription termination factor bound to rU7 and 6 ADP-BeF3 molecules
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003723 | molecular_function | RNA binding |
A | 0004386 | molecular_function | helicase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005829 | cellular_component | cytosol |
A | 0006353 | biological_process | DNA-templated transcription termination |
A | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
A | 0016020 | cellular_component | membrane |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016887 | molecular_function | ATP hydrolysis activity |
A | 0042802 | molecular_function | identical protein binding |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0003723 | molecular_function | RNA binding |
B | 0004386 | molecular_function | helicase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005524 | molecular_function | ATP binding |
B | 0005829 | cellular_component | cytosol |
B | 0006353 | biological_process | DNA-templated transcription termination |
B | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
B | 0016020 | cellular_component | membrane |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016887 | molecular_function | ATP hydrolysis activity |
B | 0042802 | molecular_function | identical protein binding |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0003723 | molecular_function | RNA binding |
C | 0004386 | molecular_function | helicase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005829 | cellular_component | cytosol |
C | 0006353 | biological_process | DNA-templated transcription termination |
C | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
C | 0016020 | cellular_component | membrane |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016887 | molecular_function | ATP hydrolysis activity |
C | 0042802 | molecular_function | identical protein binding |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0003723 | molecular_function | RNA binding |
D | 0004386 | molecular_function | helicase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005524 | molecular_function | ATP binding |
D | 0005829 | cellular_component | cytosol |
D | 0006353 | biological_process | DNA-templated transcription termination |
D | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
D | 0016020 | cellular_component | membrane |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016887 | molecular_function | ATP hydrolysis activity |
D | 0042802 | molecular_function | identical protein binding |
E | 0003676 | molecular_function | nucleic acid binding |
E | 0003723 | molecular_function | RNA binding |
E | 0004386 | molecular_function | helicase activity |
E | 0005515 | molecular_function | protein binding |
E | 0005524 | molecular_function | ATP binding |
E | 0005829 | cellular_component | cytosol |
E | 0006353 | biological_process | DNA-templated transcription termination |
E | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
E | 0016020 | cellular_component | membrane |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016887 | molecular_function | ATP hydrolysis activity |
E | 0042802 | molecular_function | identical protein binding |
F | 0003676 | molecular_function | nucleic acid binding |
F | 0003723 | molecular_function | RNA binding |
F | 0004386 | molecular_function | helicase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005524 | molecular_function | ATP binding |
F | 0005829 | cellular_component | cytosol |
F | 0006353 | biological_process | DNA-templated transcription termination |
F | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
F | 0016020 | cellular_component | membrane |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016887 | molecular_function | ATP hydrolysis activity |
F | 0042802 | molecular_function | identical protein binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue ADP A 1000 |
Chain | Residue |
A | THR158 |
A | MG1001 |
A | BEF1002 |
A | HOH1103 |
A | HOH1112 |
A | HOH1124 |
B | ARG366 |
B | LYS367 |
A | PRO179 |
A | LYS181 |
A | ALA182 |
A | GLY183 |
A | LYS184 |
A | THR185 |
A | MSE186 |
A | PHE355 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MG A 1001 |
Chain | Residue |
A | THR185 |
A | ADP1000 |
A | BEF1002 |
A | HOH1103 |
A | HOH1106 |
A | HOH1112 |
site_id | AC3 |
Number of Residues | 11 |
Details | binding site for residue BEF A 1002 |
Chain | Residue |
A | PRO180 |
A | LYS184 |
A | ARG212 |
A | LEU320 |
A | ADP1000 |
A | MG1001 |
A | HOH1103 |
A | HOH1106 |
A | HOH1112 |
B | GLY337 |
B | ARG366 |
site_id | AC4 |
Number of Residues | 15 |
Details | binding site for residue ADP B 501 |
Chain | Residue |
B | PRO179 |
B | LYS181 |
B | ALA182 |
B | GLY183 |
B | LYS184 |
B | THR185 |
B | MSE186 |
B | PHE355 |
B | MG502 |
B | BEF503 |
B | HOH602 |
B | HOH642 |
B | HOH648 |
C | ARG366 |
C | LYS367 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue MG B 502 |
Chain | Residue |
B | THR185 |
B | ADP501 |
B | BEF503 |
B | HOH602 |
B | HOH615 |
B | HOH642 |
site_id | AC6 |
Number of Residues | 13 |
Details | binding site for residue BEF B 503 |
Chain | Residue |
B | PRO180 |
B | LYS181 |
B | LYS184 |
B | ARG212 |
B | LEU320 |
B | ADP501 |
B | MG502 |
B | HOH602 |
B | HOH615 |
B | HOH635 |
B | HOH642 |
C | GLY337 |
C | ARG366 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue MPD B 504 |
Chain | Residue |
B | ARG170 |
B | ASP259 |
B | ASN306 |
B | VAL307 |
B | GLY311 |
B | HOH639 |
site_id | AC8 |
Number of Residues | 15 |
Details | binding site for residue ADP C 1000 |
Chain | Residue |
C | PRO179 |
C | LYS181 |
C | ALA182 |
C | GLY183 |
C | LYS184 |
C | THR185 |
C | MSE186 |
C | PHE355 |
C | MG1001 |
C | BEF1002 |
C | HOH1105 |
C | HOH1145 |
C | HOH1160 |
D | ARG366 |
D | LYS367 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue MG C 1001 |
Chain | Residue |
C | THR185 |
C | ADP1000 |
C | BEF1002 |
C | HOH1104 |
C | HOH1105 |
C | HOH1145 |
site_id | AD1 |
Number of Residues | 13 |
Details | binding site for residue BEF C 1002 |
Chain | Residue |
C | ADP1000 |
C | MG1001 |
C | HOH1104 |
C | HOH1105 |
C | HOH1145 |
C | HOH1155 |
D | GLY337 |
D | ARG366 |
C | PRO180 |
C | LYS181 |
C | LYS184 |
C | ARG212 |
C | LEU320 |
site_id | AD2 |
Number of Residues | 14 |
Details | binding site for residue ADP D 1000 |
Chain | Residue |
D | PRO179 |
D | LYS181 |
D | ALA182 |
D | GLY183 |
D | LYS184 |
D | THR185 |
D | MSE186 |
D | PHE355 |
D | MG1001 |
D | BEF1002 |
D | HOH1111 |
D | HOH1126 |
E | ARG366 |
E | LYS367 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue MG D 1001 |
Chain | Residue |
D | THR185 |
D | ADP1000 |
D | BEF1002 |
D | HOH1111 |
D | HOH1126 |
D | HOH1133 |
site_id | AD4 |
Number of Residues | 12 |
Details | binding site for residue BEF D 1002 |
Chain | Residue |
D | PRO180 |
D | LYS181 |
D | LYS184 |
D | ARG212 |
D | ADP1000 |
D | MG1001 |
D | HOH1111 |
D | HOH1121 |
D | HOH1126 |
D | HOH1133 |
E | GLY337 |
E | ARG366 |
site_id | AD5 |
Number of Residues | 14 |
Details | binding site for residue ADP E 1000 |
Chain | Residue |
E | THR158 |
E | PRO180 |
E | LYS181 |
E | ALA182 |
E | GLY183 |
E | LYS184 |
E | THR185 |
E | MSE186 |
E | PHE355 |
E | MG1001 |
E | BEF1002 |
E | HOH1104 |
E | HOH1110 |
E | HOH1112 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue MG E 1001 |
Chain | Residue |
E | THR185 |
E | ADP1000 |
E | BEF1002 |
E | HOH1104 |
E | HOH1110 |
E | HOH1115 |
site_id | AD7 |
Number of Residues | 8 |
Details | binding site for residue BEF E 1002 |
Chain | Residue |
E | PRO180 |
E | LYS184 |
E | ARG212 |
E | ADP1000 |
E | MG1001 |
E | HOH1110 |
E | HOH1115 |
F | ARG366 |
site_id | AD8 |
Number of Residues | 15 |
Details | binding site for residue ADP F 1000 |
Chain | Residue |
A | ARG366 |
A | LYS367 |
A | GLU369 |
F | PRO180 |
F | LYS181 |
F | ALA182 |
F | GLY183 |
F | LYS184 |
F | THR185 |
F | MSE186 |
F | PHE355 |
F | MG1001 |
F | BEF1002 |
F | HOH1101 |
F | HOH1105 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue MG F 1001 |
Chain | Residue |
F | THR185 |
F | ADP1000 |
F | BEF1002 |
F | HOH1101 |
F | HOH1103 |
F | HOH1105 |
site_id | AE1 |
Number of Residues | 11 |
Details | binding site for residue BEF F 1002 |
Chain | Residue |
A | ARG366 |
F | PRO180 |
F | LYS184 |
F | ARG212 |
F | LEU320 |
F | ADP1000 |
F | MG1001 |
F | HOH1101 |
F | HOH1103 |
F | HOH1105 |
F | HOH1108 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255 |
Chain | Residue | Details |
A | GLY169 | |
B | GLY169 | |
C | GLY169 | |
D | GLY169 | |
E | GLY169 | |
F | GLY169 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: |
Chain | Residue | Details |
D | LYS181 | |
D | ARG212 | |
E | LYS181 | |
E | ARG212 | |
F | LYS181 | |
F | ARG212 | |
A | LYS181 | |
A | ARG212 | |
B | LYS181 | |
B | ARG212 | |
C | LYS181 | |
C | ARG212 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | SITE: RNA-binding 2 |
Chain | Residue | Details |
A | LYS326 | |
B | LYS326 | |
C | LYS326 | |
D | LYS326 | |
E | LYS326 | |
F | LYS326 |