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5JF1

Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with actinonin

Functional Information from GO Data
ChainGOidnamespacecontents
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue BB2 A 301
ChainResidue
AGLY69
AOCS131
ALEU132
ATYR167
AHIS174
AGLU175
AHIS178
AZN303
AHOH594
AGLY70
AVAL71
AGLY72
AGLN77
ALEU125
AASP127
AGLY128
AGLY130

site_idAC2
Number of Residues8
Detailsbinding site for residue ACT A 302
ChainResidue
AHIS145
AGLU158
AASP177
AARG187
AZN307
AHOH430
AHOH473
AHOH504

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN A 303
ChainResidue
AGLN77
AOCS131
AHIS174
AHIS178
ABB2301

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN A 304
ChainResidue
AHIS55
AGLU198
AHOH491
AHOH529
AHOH586

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN A 305
ChainResidue
AHIS118
AASP154
AHOH415
AHOH584
AHOH593

site_idAC6
Number of Residues5
Detailsbinding site for residue ZN A 306
ChainResidue
AASP94
AGLU190
AHOH441
AHOH475
AHOH555

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN A 307
ChainResidue
AHIS145
AGLU158
AACT302
AHOH504

site_idAC8
Number of Residues5
Detailsbinding site for residue ZN A 308
ChainResidue
AHIS12
AASP18
AHOH414
AHOH474
AHOH569

site_idAC9
Number of Residues3
Detailsbinding site for residue ZN A 309
ChainResidue
AGLU43
AGLU47
AHOH576

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN A 310
ChainResidue
AGLU102
AGLU151
AHOH557
AHOH559

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00163
ChainResidueDetails
AGLU175

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00163
ChainResidueDetails
AOCS131
AHIS174
AHIS178

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PDB entries from 2024-04-17

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