5J02

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	binding site for residue MG A 501

Chain	Residue
A	C358
A	G359
A	C377
A	U419
A	HOH664

---

site_id	AC2
Number of Residues	8
Details	binding site for residue MG A 502

Chain	Residue
A	HOH630
A	HOH641
A	HOH735
A	HOH746
A	U4
A	G5
A	HOH607
A	HOH613

---

site_id	AC3
Number of Residues	6
Details	binding site for residue MG A 503

Chain	Residue
A	U2
A	G3
A	HOH650
A	HOH653
A	HOH674
A	HOH710

---

site_id	AC4
Number of Residues	6
Details	binding site for residue MG A 504

Chain	Residue
A	HOH622
A	HOH637
A	HOH638
A	HOH701
A	HOH715
A	HOH768

---

site_id	AC5
Number of Residues	6
Details	binding site for residue MG A 505

Chain	Residue
A	A355
A	A356
A	HOH617
A	HOH624
A	HOH634
A	HOH668

---

site_id	AC6
Number of Residues	5
Details	binding site for residue MG A 506

Chain	Residue
A	C74
A	G75
A	HOH679
A	HOH682
A	HOH742

---

site_id	AC7
Number of Residues	5
Details	binding site for residue MG A 507

Chain	Residue
A	G114
A	A115
A	HOH621
A	HOH627
A	HOH648

---

site_id	AC8
Number of Residues	2
Details	binding site for residue MG A 508

Chain	Residue
A	G107
A	HOH748

---

site_id	AC9
Number of Residues	2
Details	binding site for residue MG A 509

Chain	Residue
A	G104
A	A105

---

site_id	AD1
Number of Residues	6
Details	binding site for residue MG A 510

Chain	Residue
A	G111
A	HOH649
A	HOH676
A	HOH694
A	HOH712
A	HOH747

---

site_id	AD2
Number of Residues	6
Details	binding site for residue MG A 511

Chain	Residue
A	G136
A	HOH655
A	HOH662
A	HOH708
A	HOH716
A	HOH722

---

site_id	AD3
Number of Residues	4
Details	binding site for residue MG A 512

Chain	Residue
A	G142
A	HOH685
A	HOH686
A	HOH733

---

site_id	AD4
Number of Residues	6
Details	binding site for residue MG A 513

Chain	Residue
A	C145
A	HOH644
A	HOH651
A	HOH663
A	HOH707
A	HOH709

---

site_id	AD5
Number of Residues	6
Details	binding site for residue MG A 514

Chain	Residue
A	C360
A	G374
A	HOH661
A	HOH677
A	HOH678
A	HOH680

---

site_id	AD6
Number of Residues	6
Details	binding site for residue MG A 515

Chain	Residue
A	A186
A	HOH667
A	HOH703
A	HOH705
A	HOH706
A	HOH754

---

site_id	AD7
Number of Residues	6
Details	binding site for residue MG A 516

Chain	Residue
A	C372
A	HOH626
A	HOH646
A	HOH658
A	HOH713
A	HOH718

---

site_id	AD8
Number of Residues	4
Details	binding site for residue MG A 517

Chain	Residue
A	A326
A	HOH608
A	HOH711
A	HOH714

---

site_id	AD9
Number of Residues	6
Details	binding site for residue MG A 518

Chain	Residue
A	A370
A	HOH623
A	HOH640
A	HOH666
A	HOH698
A	HOH764

---

site_id	AE1
Number of Residues	5
Details	binding site for residue MG A 519

Chain	Residue
A	HOH734
A	A333
A	U334
A	HOH604
A	HOH695

---

site_id	AE2
Number of Residues	5
Details	binding site for residue MG A 520

Chain	Residue
A	G21
A	HOH620
A	HOH631
A	HOH643
A	HOH770

---

site_id	AE3
Number of Residues	7
Details	binding site for residue MG A 521

Chain	Residue
A	U59
A	HOH606
A	HOH611
A	HOH671
A	HOH725
A	HOH752
A	HOH755

---

site_id	AE4
Number of Residues	2
Details	binding site for residue MG A 522

Chain	Residue
A	G264
A	G265

---

site_id	AE5
Number of Residues	5
Details	binding site for residue MG A 523

Chain	Residue
A	HOH614
A	HOH619
A	HOH636
A	HOH717
A	HOH729

---

site_id	AE6
Number of Residues	6
Details	binding site for residue MG A 524

Chain	Residue
A	U66
A	A67
A	HOH601
A	HOH602
A	HOH704
A	HOH719

---

site_id	AE7
Number of Residues	6
Details	binding site for residue MG A 525

Chain	Residue
A	A154
A	G155
A	HOH612
A	HOH629
A	HOH645
A	HOH683

---

site_id	AE8
Number of Residues	6
Details	binding site for residue MG A 526

Chain	Residue
A	HOH737
A	HOH756
A	HOH758
A	HOH762
A	HOH767
A	HOH769

---

site_id	AE9
Number of Residues	6
Details	binding site for residue MG A 527

Chain	Residue
A	G28
A	HOH609
A	HOH632
A	HOH642
A	HOH736
A	HOH739

---

site_id	AF1
Number of Residues	3
Details	binding site for residue MG A 528

Chain	Residue
A	G10
A	C11
A	HOH761

---

site_id	AF2
Number of Residues	3
Details	binding site for residue MG A 529

Chain	Residue
A	G314
A	G315
A	HOH763

---

site_id	AF3
Number of Residues	5
Details	binding site for residue MG A 530

Chain	Residue
A	C116
A	G117
A	HOH652
A	HOH690
A	HOH751

---

site_id	AF4
Number of Residues	1
Details	binding site for residue MG A 531

Chain	Residue
A	U285

---

site_id	AF5
Number of Residues	6
Details	binding site for residue MG A 532

Chain	Residue
A	A67
A	G68
A	HOH654
A	HOH681
A	HOH687
A	HOH721

---

site_id	AF6
Number of Residues	6
Details	binding site for residue MG A 533

Chain	Residue
A	G324
A	G325
A	HOH625
A	HOH688
A	HOH738
A	HOH744

---

site_id	AF7
Number of Residues	7
Details	binding site for residue MG A 534

Chain	Residue
A	C119
A	G239
A	HOH639
A	HOH669
A	HOH670
A	HOH673
A	HOH691

---

site_id	AF8
Number of Residues	2
Details	binding site for residue MG A 535

Chain	Residue
A	C131
A	HOH757

---

site_id	AF9
Number of Residues	6
Details	binding site for residue MG A 536

Chain	Residue
A	A283
A	HOH656
A	HOH657
A	HOH675
A	HOH724
A	HOH726

---

site_id	AG1
Number of Residues	2
Details	binding site for residue MG A 537

Chain	Residue
A	A12
A	HOH660

---

site_id	AG2
Number of Residues	3
Details	binding site for residue MG A 538

Chain	Residue
A	HOH659
A	HOH760
A	HOH771

---

site_id	AG3
Number of Residues	6
Details	binding site for residue MG A 539

Chain	Residue
A	G275
A	HOH633
A	HOH693
A	HOH697
A	HOH702
A	HOH765

---

site_id	AG4
Number of Residues	5
Details	binding site for residue MG A 540

Chain	Residue
A	G89
A	HOH628
A	HOH720
A	HOH723
A	HOH740

---

site_id	AG5
Number of Residues	3
Details	binding site for residue MG A 542

Chain	Residue
A	A183
A	HOH684
A	HOH766

---

site_id	AG6
Number of Residues	1
Details	binding site for residue MG A 543

Chain	Residue
A	G232

---

site_id	AG7
Number of Residues	7
Details	binding site for residue MG A 544

Chain	Residue
A	U132
A	HOH616
A	HOH665
A	HOH672
A	HOH741
A	HOH743
A	HOH759

---

site_id	AG8
Number of Residues	4
Details	binding site for residue MG A 545

Chain	Residue
A	A222
A	A224
A	HOH618
A	HOH696

---

site_id	AG9
Number of Residues	4
Details	binding site for residue MG A 546

Chain	Residue
A	A223
A	HOH647
A	HOH745
A	HOH749

---

site_id	AH1
Number of Residues	6
Details	binding site for residue MG A 547

Chain	Residue
A	G275
A	A277
A	HOH610
A	HOH699
A	HOH730
A	HOH731

---

site_id	AH2
Number of Residues	6
Details	binding site for residue MG A 548

Chain	Residue
A	U96
A	HOH635
A	HOH727
A	HOH728
A	HOH732
A	HOH750

---

site_id	AH3
Number of Residues	1
Details	binding site for residue MG A 549

Chain	Residue
A	G244

---

site_id	AH4
Number of Residues	6
Details	binding site for residue MG A 550

Chain	Residue
A	A181
A	HOH615
A	HOH689
A	HOH692
A	HOH700
A	HOH753

---

site_id	AH5
Number of Residues	1
Details	binding site for residue NH4 A 551

Chain	Residue
A	U26

---

site_id	AH6
Number of Residues	2
Details	binding site for residue NH4 A 552

Chain	Residue
A	C262
A	C263

---

site_id	AH7
Number of Residues	2
Details	binding site for residue NH4 A 553

Chain	Residue
A	G169
A	HOH605

---

site_id	AH8
Number of Residues	2
Details	binding site for residue NH4 A 554

Chain	Residue
A	G275
A	HOH699

---

site_id	AH9
Number of Residues	1
Details	binding site for residue NH4 A 555

Chain	Residue
A	U31

---

site_id	AI1
Number of Residues	2
Details	binding site for residue NH4 A 556

Chain	Residue
A	G32
A	A33

---

site_id	AI2
Number of Residues	3
Details	binding site for residue NH4 A 557

Chain	Residue
A	G32
A	A33
A	G34

---

site_id	AI3
Number of Residues	1
Details	binding site for residue NH4 A 558

Chain	Residue
A	A246

---

site_id	AI4
Number of Residues	1
Details	binding site for residue NH4 A 559

Chain	Residue
A	A166

---

site_id	AI5
Number of Residues	1
Details	binding site for residue NH4 A 560

Chain	Residue
A	G265

---