5IY5
Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
1 | 0005515 | molecular_function | protein binding |
1 | 0005739 | cellular_component | mitochondrion |
1 | 0005758 | cellular_component | mitochondrial intermembrane space |
1 | 0005829 | cellular_component | cytosol |
1 | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
1 | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
1 | 0006915 | biological_process | apoptotic process |
1 | 0008289 | molecular_function | lipid binding |
1 | 0009055 | molecular_function | electron transfer activity |
1 | 0018063 | biological_process | cytochrome c-heme linkage |
1 | 0020037 | molecular_function | heme binding |
1 | 0042802 | molecular_function | identical protein binding |
1 | 0043065 | biological_process | positive regulation of apoptotic process |
1 | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
1 | 0046872 | molecular_function | metal ion binding |
1 | 0070069 | cellular_component | cytochrome complex |
1 | 0070469 | cellular_component | respirasome |
1 | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
2 | 0005515 | molecular_function | protein binding |
2 | 0005739 | cellular_component | mitochondrion |
2 | 0005758 | cellular_component | mitochondrial intermembrane space |
2 | 0005829 | cellular_component | cytosol |
2 | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
2 | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
2 | 0006915 | biological_process | apoptotic process |
2 | 0008289 | molecular_function | lipid binding |
2 | 0009055 | molecular_function | electron transfer activity |
2 | 0018063 | biological_process | cytochrome c-heme linkage |
2 | 0020037 | molecular_function | heme binding |
2 | 0042802 | molecular_function | identical protein binding |
2 | 0043065 | biological_process | positive regulation of apoptotic process |
2 | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
2 | 0046872 | molecular_function | metal ion binding |
2 | 0070069 | cellular_component | cytochrome complex |
2 | 0070469 | cellular_component | respirasome |
2 | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
A | 0004129 | molecular_function | cytochrome-c oxidase activity |
A | 0005739 | cellular_component | mitochondrion |
A | 0005743 | cellular_component | mitochondrial inner membrane |
A | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
A | 0006119 | biological_process | oxidative phosphorylation |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0009060 | biological_process | aerobic respiration |
A | 0015990 | biological_process | electron transport coupled proton transport |
A | 0016020 | cellular_component | membrane |
A | 0020037 | molecular_function | heme binding |
A | 0045277 | cellular_component | respiratory chain complex IV |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
B | 0004129 | molecular_function | cytochrome-c oxidase activity |
B | 0005507 | molecular_function | copper ion binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005743 | cellular_component | mitochondrial inner membrane |
B | 0016020 | cellular_component | membrane |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0022900 | biological_process | electron transport chain |
B | 0042773 | biological_process | ATP synthesis coupled electron transport |
B | 0045277 | cellular_component | respiratory chain complex IV |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
B | 1902600 | biological_process | proton transmembrane transport |
C | 0004129 | molecular_function | cytochrome-c oxidase activity |
C | 0005739 | cellular_component | mitochondrion |
C | 0005743 | cellular_component | mitochondrial inner membrane |
C | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
C | 0008535 | biological_process | respiratory chain complex IV assembly |
C | 0009055 | molecular_function | electron transfer activity |
C | 0016020 | cellular_component | membrane |
C | 0019646 | biological_process | aerobic electron transport chain |
C | 0022904 | biological_process | respiratory electron transport chain |
C | 0045277 | cellular_component | respiratory chain complex IV |
C | 1902600 | biological_process | proton transmembrane transport |
D | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
D | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
E | 0005743 | cellular_component | mitochondrial inner membrane |
E | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
E | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
F | 0005740 | cellular_component | mitochondrial envelope |
F | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
F | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
G | 0005743 | cellular_component | mitochondrial inner membrane |
G | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
H | 0005739 | cellular_component | mitochondrion |
H | 0005743 | cellular_component | mitochondrial inner membrane |
H | 0006119 | biological_process | oxidative phosphorylation |
H | 0045277 | cellular_component | respiratory chain complex IV |
I | 0005739 | cellular_component | mitochondrion |
I | 0005743 | cellular_component | mitochondrial inner membrane |
I | 0006119 | biological_process | oxidative phosphorylation |
I | 0045277 | cellular_component | respiratory chain complex IV |
J | 0005746 | cellular_component | mitochondrial respirasome |
J | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
J | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
K | 0005746 | cellular_component | mitochondrial respirasome |
K | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
L | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
L | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
M | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
M | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
N | 0004129 | molecular_function | cytochrome-c oxidase activity |
N | 0005739 | cellular_component | mitochondrion |
N | 0005743 | cellular_component | mitochondrial inner membrane |
N | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
N | 0006119 | biological_process | oxidative phosphorylation |
N | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
N | 0009060 | biological_process | aerobic respiration |
N | 0015990 | biological_process | electron transport coupled proton transport |
N | 0016020 | cellular_component | membrane |
N | 0020037 | molecular_function | heme binding |
N | 0045277 | cellular_component | respiratory chain complex IV |
N | 0046872 | molecular_function | metal ion binding |
N | 0070469 | cellular_component | respirasome |
O | 0004129 | molecular_function | cytochrome-c oxidase activity |
O | 0005507 | molecular_function | copper ion binding |
O | 0005739 | cellular_component | mitochondrion |
O | 0005743 | cellular_component | mitochondrial inner membrane |
O | 0016020 | cellular_component | membrane |
O | 0016491 | molecular_function | oxidoreductase activity |
O | 0022900 | biological_process | electron transport chain |
O | 0042773 | biological_process | ATP synthesis coupled electron transport |
O | 0045277 | cellular_component | respiratory chain complex IV |
O | 0046872 | molecular_function | metal ion binding |
O | 0070469 | cellular_component | respirasome |
O | 1902600 | biological_process | proton transmembrane transport |
P | 0004129 | molecular_function | cytochrome-c oxidase activity |
P | 0005739 | cellular_component | mitochondrion |
P | 0005743 | cellular_component | mitochondrial inner membrane |
P | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
P | 0008535 | biological_process | respiratory chain complex IV assembly |
P | 0009055 | molecular_function | electron transfer activity |
P | 0016020 | cellular_component | membrane |
P | 0019646 | biological_process | aerobic electron transport chain |
P | 0022904 | biological_process | respiratory electron transport chain |
P | 0045277 | cellular_component | respiratory chain complex IV |
P | 1902600 | biological_process | proton transmembrane transport |
Q | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
Q | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
R | 0005743 | cellular_component | mitochondrial inner membrane |
R | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
R | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
S | 0005740 | cellular_component | mitochondrial envelope |
S | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
S | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
T | 0005743 | cellular_component | mitochondrial inner membrane |
T | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
U | 0005739 | cellular_component | mitochondrion |
U | 0005743 | cellular_component | mitochondrial inner membrane |
U | 0006119 | biological_process | oxidative phosphorylation |
U | 0045277 | cellular_component | respiratory chain complex IV |
V | 0005739 | cellular_component | mitochondrion |
V | 0005743 | cellular_component | mitochondrial inner membrane |
V | 0006119 | biological_process | oxidative phosphorylation |
V | 0045277 | cellular_component | respiratory chain complex IV |
W | 0005746 | cellular_component | mitochondrial respirasome |
W | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
W | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
X | 0005746 | cellular_component | mitochondrial respirasome |
X | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
Y | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
Y | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
Z | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
Z | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue CU A 601 |
Chain | Residue |
A | HIS240 |
A | HIS290 |
A | HIS291 |
A | PER606 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MG A 602 |
Chain | Residue |
B | HOH531 |
A | HIS368 |
A | ASP369 |
B | GLU198 |
B | HOH434 |
B | HOH436 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue NA A 603 |
Chain | Residue |
A | GLU40 |
A | GLY45 |
A | SER441 |
A | HOH783 |
site_id | AC4 |
Number of Residues | 31 |
Details | binding site for residue HEA A 604 |
Chain | Residue |
A | ALA24 |
A | GLY27 |
A | MET28 |
A | THR31 |
A | SER34 |
A | ILE37 |
A | ARG38 |
A | TYR54 |
A | VAL58 |
A | HIS61 |
A | ALA62 |
A | MET65 |
A | VAL70 |
A | ILE73 |
A | GLY125 |
A | TRP126 |
A | TYR371 |
A | PHE377 |
A | HIS378 |
A | SER382 |
A | VAL386 |
A | PHE393 |
A | MET417 |
A | PHE425 |
A | GLN428 |
A | ARG438 |
A | ARG439 |
A | MET468 |
A | HOH735 |
A | HOH740 |
A | HOH749 |
site_id | AC5 |
Number of Residues | 31 |
Details | binding site for residue HEA A 605 |
Chain | Residue |
A | TRP126 |
A | TRP236 |
A | VAL243 |
A | TYR244 |
A | HIS290 |
A | HIS291 |
A | THR309 |
A | ILE312 |
A | ALA313 |
A | GLY317 |
A | GLY352 |
A | GLY355 |
A | ILE356 |
A | LEU358 |
A | ALA359 |
A | ASP364 |
A | HIS368 |
A | VAL373 |
A | HIS376 |
A | PHE377 |
A | VAL380 |
A | LEU381 |
A | ARG438 |
A | PER606 |
A | HOH750 |
A | HOH767 |
A | HOH772 |
A | HOH791 |
B | ILE34 |
B | PRO69 |
B | ILE72 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue PER A 606 |
Chain | Residue |
A | HIS240 |
A | VAL243 |
A | HIS291 |
A | CU601 |
A | HEA605 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residue PGV A 607 |
Chain | Residue |
A | ASN406 |
A | TRP409 |
A | HOH701 |
A | HOH833 |
D | PHE87 |
K | PHE9 |
M | GLN15 |
M | HOH216 |
site_id | AC8 |
Number of Residues | 15 |
Details | binding site for residue PGV A 608 |
Chain | Residue |
C | GLU64 |
C | HIS71 |
C | GLY82 |
C | PEK303 |
C | PGV304 |
A | PHE94 |
A | PRO95 |
A | ARG96 |
A | MET97 |
A | HOH748 |
A | HOH759 |
C | HIS9 |
C | ASN50 |
C | TRP57 |
C | TRP58 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue TGL B 301 |
Chain | Residue |
A | ASN422 |
A | LEU433 |
B | LEU28 |
B | PHE32 |
B | SER35 |
B | SER36 |
B | HOH465 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue CUA B 302 |
Chain | Residue |
B | HIS161 |
B | CYS196 |
B | GLU198 |
B | CYS200 |
B | HIS204 |
B | MET207 |
site_id | AD2 |
Number of Residues | 8 |
Details | binding site for residue EDO B 303 |
Chain | Residue |
A | TYR447 |
B | ALA2 |
B | GLN10 |
B | LEU136 |
B | PRO166 |
B | TYR193 |
B | HOH471 |
B | HOH483 |
site_id | AD3 |
Number of Residues | 10 |
Details | binding site for residue CHD C 301 |
Chain | Residue |
A | HIS233 |
A | ASP300 |
A | THR301 |
A | TYR304 |
C | TRP99 |
C | HIS103 |
C | PGV305 |
C | HOH497 |
C | HOH500 |
T | CDL101 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue NA C 302 |
Chain | Residue |
C | HIS148 |
C | HIS232 |
C | GLU236 |
site_id | AD5 |
Number of Residues | 18 |
Details | binding site for residue PEK C 303 |
Chain | Residue |
A | HIS151 |
A | VAL155 |
A | PGV608 |
C | TYR181 |
C | TYR182 |
C | ALA184 |
C | PHE186 |
C | THR187 |
C | ILE188 |
C | PHE198 |
C | GLY202 |
G | TRP62 |
G | THR68 |
G | PHE69 |
G | PHE70 |
G | HIS71 |
G | ASN76 |
G | HOH226 |
site_id | AD6 |
Number of Residues | 20 |
Details | binding site for residue PGV C 304 |
Chain | Residue |
A | PGV608 |
C | MET51 |
C | MET54 |
C | VAL61 |
C | SER65 |
C | THR66 |
C | GLU90 |
C | ILE210 |
C | PHE214 |
C | ARG221 |
C | HIS226 |
C | PHE227 |
C | HIS231 |
C | PHE233 |
C | GLY234 |
C | CDL306 |
C | HOH436 |
C | HOH438 |
C | HOH485 |
F | HOH227 |
site_id | AD7 |
Number of Residues | 14 |
Details | binding site for residue PGV C 305 |
Chain | Residue |
A | ASP298 |
B | HOH529 |
C | TRP99 |
C | TYR102 |
C | HIS103 |
C | ALA107 |
C | CHD301 |
C | HOH427 |
C | HOH431 |
C | HOH502 |
H | ASN22 |
P | TRP258 |
T | CDL101 |
T | HOH241 |
site_id | AD8 |
Number of Residues | 19 |
Details | binding site for residue CDL C 306 |
Chain | Residue |
C | MET51 |
C | LEU52 |
C | MET54 |
C | TYR55 |
C | ARG59 |
C | ARG63 |
C | PHE67 |
C | THR213 |
C | PHE220 |
C | LYS224 |
C | HIS226 |
C | PGV304 |
C | HOH401 |
C | HOH406 |
C | HOH470 |
C | HOH471 |
C | HOH534 |
C | HOH536 |
J | LYS8 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue CHD C 307 |
Chain | Residue |
C | ARG156 |
C | GLN161 |
C | PHE164 |
J | PHE1 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue EDO C 311 |
Chain | Residue |
C | GLU111 |
C | HOH420 |
C | HOH506 |
H | HOH128 |
site_id | AE2 |
Number of Residues | 11 |
Details | binding site for residue TGL D 201 |
Chain | Residue |
A | TRP334 |
A | MET339 |
A | GLY343 |
B | LYS49 |
D | ARG73 |
D | GLU77 |
D | TRP78 |
D | HOH303 |
D | HOH306 |
D | HOH392 |
I | HIS20 |
site_id | AE3 |
Number of Residues | 17 |
Details | binding site for residue PSC E 201 |
Chain | Residue |
A | PHE321 |
B | LEU37 |
B | ILE41 |
B | HIS52 |
B | MET56 |
B | ASP57 |
B | GLU60 |
B | VAL61 |
B | TRP65 |
B | LEU68 |
B | HOH554 |
E | HIS5 |
E | GLU6 |
E | THR7 |
E | ASP8 |
E | PHE11 |
I | HOH221 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue EDO E 202 |
Chain | Residue |
E | GLU102 |
E | HOH301 |
E | HOH307 |
E | HOH391 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue ZN F 101 |
Chain | Residue |
F | CYS60 |
F | CYS62 |
F | CYS82 |
F | CYS85 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue EDO F 102 |
Chain | Residue |
C | HIS231 |
C | HOH424 |
F | ASP9 |
F | GLU17 |
F | HOH221 |
site_id | AE7 |
Number of Residues | 19 |
Details | binding site for residue CDL G 101 |
Chain | Residue |
C | VAL142 |
C | HOH526 |
G | LEU23 |
G | SER27 |
G | LEU30 |
G | CYS31 |
G | ASN34 |
G | LEU37 |
G | HIS38 |
G | HOH202 |
G | HOH244 |
N | TYR304 |
N | SER307 |
N | ILE311 |
O | ALA77 |
O | LEU78 |
O | LEU81 |
O | TYR85 |
O | HOH465 |
site_id | AE8 |
Number of Residues | 9 |
Details | binding site for residue CHD G 102 |
Chain | Residue |
G | ARG14 |
G | ARG17 |
G | GLY22 |
G | HOH208 |
G | HOH216 |
N | MET271 |
N | TRP275 |
O | GLU62 |
O | THR63 |
site_id | AE9 |
Number of Residues | 6 |
Details | binding site for residue EDO G 103 |
Chain | Residue |
C | GLY120 |
G | ALA46 |
G | PHE47 |
G | ILE48 |
G | ARG54 |
G | HOH229 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue EDO I 101 |
Chain | Residue |
I | TYR54 |
I | ASP55 |
I | GLU62 |
site_id | AF2 |
Number of Residues | 5 |
Details | binding site for residue CHD J 101 |
Chain | Residue |
J | TYR32 |
J | MET36 |
J | THR37 |
J | LEU40 |
J | HOH221 |
site_id | AF3 |
Number of Residues | 12 |
Details | binding site for residue TGL L 101 |
Chain | Residue |
A | THR17 |
A | TRP25 |
A | PHE400 |
L | PRO12 |
L | PHE13 |
L | SER14 |
L | ARG20 |
L | MET25 |
L | LEU27 |
L | PHE28 |
L | PHE29 |
L | SER31 |
site_id | AF4 |
Number of Residues | 8 |
Details | binding site for residue DMU M 101 |
Chain | Residue |
D | TRP98 |
M | LEU28 |
M | GLY31 |
M | TRP32 |
M | LEU34 |
M | TYR35 |
M | HIS36 |
M | HOH211 |
site_id | AF5 |
Number of Residues | 4 |
Details | binding site for residue CU N 602 |
Chain | Residue |
N | HIS240 |
N | HIS290 |
N | HIS291 |
N | PER607 |
site_id | AF6 |
Number of Residues | 6 |
Details | binding site for residue MG N 603 |
Chain | Residue |
N | HIS368 |
N | ASP369 |
O | GLU198 |
O | HOH414 |
O | HOH445 |
O | HOH512 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue NA N 604 |
Chain | Residue |
N | GLU40 |
N | GLY45 |
N | SER441 |
N | HOH806 |
site_id | AF8 |
Number of Residues | 32 |
Details | binding site for residue HEA N 605 |
Chain | Residue |
N | ALA24 |
N | MET28 |
N | THR31 |
N | SER34 |
N | ILE37 |
N | ARG38 |
N | TYR54 |
N | VAL58 |
N | HIS61 |
N | ALA62 |
N | MET65 |
N | VAL70 |
N | GLY125 |
N | TRP126 |
N | TYR371 |
N | PHE377 |
N | HIS378 |
N | SER382 |
N | VAL386 |
N | MET390 |
N | PHE393 |
N | PHE425 |
N | GLN428 |
N | ARG438 |
N | ARG439 |
N | TYR440 |
N | VAL465 |
N | MET468 |
N | ILE472 |
N | HOH743 |
N | HOH766 |
N | HOH794 |
site_id | AF9 |
Number of Residues | 28 |
Details | binding site for residue HEA N 606 |
Chain | Residue |
N | TRP126 |
N | TRP236 |
N | VAL243 |
N | TYR244 |
N | HIS290 |
N | HIS291 |
N | THR309 |
N | ILE312 |
N | THR316 |
N | GLY317 |
N | GLY352 |
N | GLY355 |
N | LEU358 |
N | ALA359 |
N | ASP364 |
N | HIS368 |
N | VAL373 |
N | HIS376 |
N | PHE377 |
N | VAL380 |
N | LEU381 |
N | ARG438 |
N | PER607 |
N | HOH715 |
N | HOH745 |
N | HOH785 |
N | HOH834 |
O | ILE34 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue PER N 607 |
Chain | Residue |
N | HIS240 |
N | VAL243 |
N | HIS291 |
N | CU602 |
N | HEA606 |
site_id | AG2 |
Number of Residues | 10 |
Details | binding site for residue TGL N 608 |
Chain | Residue |
N | PHE346 |
N | TYR379 |
N | ASN422 |
N | HIS429 |
N | PHE430 |
N | LEU433 |
O | LEU28 |
O | PHE32 |
O | SER35 |
O | LEU39 |
site_id | AG3 |
Number of Residues | 16 |
Details | binding site for residue PGV N 612 |
Chain | Residue |
N | PHE94 |
N | PRO95 |
N | ARG96 |
N | MET97 |
N | HOH730 |
N | HOH772 |
P | HIS9 |
P | ASN50 |
P | MET54 |
P | TRP57 |
P | TRP58 |
P | GLU64 |
P | HIS71 |
P | GLY82 |
P | PHE93 |
P | PEK303 |
site_id | AG4 |
Number of Residues | 6 |
Details | binding site for residue EDO N 613 |
Chain | Residue |
N | TYR260 |
N | TYR261 |
N | HIS395 |
N | HOH716 |
N | HOH731 |
Z | ILE1 |
site_id | AG5 |
Number of Residues | 1 |
Details | binding site for residue EDO N 614 |
Chain | Residue |
P | LEU22 |
site_id | AG6 |
Number of Residues | 6 |
Details | binding site for residue CUA O 301 |
Chain | Residue |
O | HIS161 |
O | CYS196 |
O | GLU198 |
O | CYS200 |
O | HIS204 |
O | MET207 |
site_id | AG7 |
Number of Residues | 7 |
Details | binding site for residue CHD P 301 |
Chain | Residue |
N | HIS233 |
N | ASP300 |
N | THR301 |
N | TYR304 |
P | TRP99 |
P | HIS103 |
P | PGV305 |
site_id | AG8 |
Number of Residues | 4 |
Details | binding site for residue NA P 302 |
Chain | Residue |
P | HIS148 |
P | HIS232 |
P | GLU236 |
P | HOH492 |
site_id | AG9 |
Number of Residues | 20 |
Details | binding site for residue PEK P 303 |
Chain | Residue |
N | HIS151 |
N | VAL155 |
N | PGV612 |
P | TYR181 |
P | TYR182 |
P | ALA184 |
P | PHE186 |
P | THR187 |
P | ILE188 |
P | PHE198 |
P | GLY202 |
P | PHE203 |
P | GLY205 |
P | HOH457 |
T | TRP62 |
T | THR68 |
T | PHE69 |
T | PHE70 |
T | HIS71 |
T | ASN76 |
site_id | AH1 |
Number of Residues | 19 |
Details | binding site for residue PGV P 304 |
Chain | Residue |
P | MET51 |
P | TRP58 |
P | VAL61 |
P | SER65 |
P | THR66 |
P | PHE86 |
P | ILE210 |
P | PHE214 |
P | ARG221 |
P | HIS226 |
P | PHE227 |
P | HIS231 |
P | HIS232 |
P | PHE233 |
P | GLY234 |
P | HOH418 |
P | HOH426 |
P | HOH476 |
S | HOH211 |
site_id | AH2 |
Number of Residues | 8 |
Details | binding site for residue PGV P 305 |
Chain | Residue |
P | TRP99 |
P | HIS103 |
P | ALA107 |
P | CHD301 |
P | HOH481 |
U | ASN24 |
U | HOH103 |
U | HOH136 |
site_id | AH3 |
Number of Residues | 16 |
Details | binding site for residue CDL P 306 |
Chain | Residue |
P | MET51 |
P | LEU52 |
P | TYR55 |
P | ARG59 |
P | ILE62 |
P | PHE67 |
P | THR213 |
P | ILE216 |
P | VAL217 |
P | PHE220 |
P | LYS224 |
P | HIS226 |
P | HOH401 |
P | HOH403 |
P | HOH411 |
P | HOH425 |
site_id | AH4 |
Number of Residues | 5 |
Details | binding site for residue CHD P 307 |
Chain | Residue |
P | ARG156 |
P | PHE164 |
P | LEU223 |
P | HOH504 |
W | PHE1 |
site_id | AH5 |
Number of Residues | 11 |
Details | binding site for residue TGL Q 201 |
Chain | Residue |
N | TRP334 |
N | PHE414 |
N | HOH737 |
O | ILE42 |
Q | THR75 |
Q | GLU77 |
Q | TRP78 |
Q | ILE89 |
Q | HOH310 |
V | ARG16 |
V | HIS20 |
site_id | AH6 |
Number of Residues | 4 |
Details | binding site for residue ZN S 101 |
Chain | Residue |
S | CYS60 |
S | CYS62 |
S | CYS82 |
S | CYS85 |
site_id | AH7 |
Number of Residues | 5 |
Details | binding site for residue EDO S 102 |
Chain | Residue |
P | HOH467 |
S | ASP9 |
S | GLU17 |
S | HOH221 |
S | HOH241 |
site_id | AH8 |
Number of Residues | 19 |
Details | binding site for residue CDL T 101 |
Chain | Residue |
A | PHE282 |
A | ILE286 |
A | ASP300 |
A | TYR304 |
A | ILE311 |
A | HOH911 |
A | HOH927 |
B | ALA70 |
B | ILE74 |
B | LEU78 |
B | LEU81 |
B | HOH533 |
C | CHD301 |
C | PGV305 |
P | LEU127 |
T | SER27 |
T | CYS31 |
T | ASN34 |
T | HIS38 |
site_id | AH9 |
Number of Residues | 11 |
Details | binding site for residue CHD T 103 |
Chain | Residue |
A | MET271 |
A | TRP275 |
B | THR63 |
B | THR66 |
T | ARG14 |
T | ARG17 |
T | PHE18 |
T | PHE21 |
T | GLY22 |
T | HOH205 |
T | HOH215 |
site_id | AI1 |
Number of Residues | 18 |
Details | binding site for residue PSC V 101 |
Chain | Residue |
N | PHE268 |
N | PHE321 |
N | ALA325 |
N | HIS328 |
O | MET45 |
O | HIS52 |
O | MET56 |
O | ASP57 |
O | VAL61 |
O | TRP65 |
O | LEU68 |
R | HIS5 |
R | ASP8 |
V | ARG10 |
V | LEU17 |
V | ARG18 |
V | HOH201 |
V | HOH212 |
site_id | AI2 |
Number of Residues | 7 |
Details | binding site for residue CHD W 101 |
Chain | Residue |
N | ILE3 |
N | PHE8 |
W | TYR32 |
W | ARG33 |
W | MET36 |
W | LEU40 |
W | HOH204 |
site_id | AI3 |
Number of Residues | 9 |
Details | binding site for residue DMU Z 101 |
Chain | Residue |
N | LEU35 |
N | PHE459 |
Q | TRP98 |
Q | HOH359 |
Z | LEU27 |
Z | LEU28 |
Z | GLY31 |
Z | TRP32 |
Z | HIS36 |
site_id | AI4 |
Number of Residues | 5 |
Details | binding site for Di-peptide ACE 1 0 and GLY 1 1 |
Chain | Residue |
1 | ASP2 |
1 | VAL3 |
1 | GLU92 |
1 | ASP93 |
1 | ALA96 |
site_id | AI5 |
Number of Residues | 21 |
Details | binding site for Di-peptide HEM 1 201 and CYS 1 14 |
Chain | Residue |
1 | PHE10 |
1 | LYS13 |
1 | ALA15 |
1 | GLN16 |
1 | CYS17 |
1 | HIS18 |
1 | THR28 |
1 | PRO30 |
1 | THR40 |
1 | GLY41 |
1 | TYR48 |
1 | THR49 |
1 | ASN52 |
1 | TRP59 |
1 | TYR67 |
1 | LEU68 |
1 | THR78 |
1 | LYS79 |
1 | MET80 |
1 | ILE81 |
1 | PHE82 |
site_id | AI6 |
Number of Residues | 21 |
Details | binding site for Di-peptide HEM 1 201 and CYS 1 17 |
Chain | Residue |
1 | LYS13 |
1 | CYS14 |
1 | ALA15 |
1 | GLN16 |
1 | HIS18 |
1 | THR28 |
1 | GLY29 |
1 | PRO30 |
1 | THR40 |
1 | GLY41 |
1 | TYR48 |
1 | THR49 |
1 | ASN52 |
1 | TRP59 |
1 | TYR67 |
1 | LEU68 |
1 | THR78 |
1 | LYS79 |
1 | MET80 |
1 | ILE81 |
1 | PHE82 |
site_id | AI7 |
Number of Residues | 1 |
Details | binding site for Di-peptide ACE 2 0 and GLY 2 1 |
Chain | Residue |
2 | ASP2 |
site_id | AI8 |
Number of Residues | 21 |
Details | binding site for Di-peptide HEM 2 201 and CYS 2 17 |
Chain | Residue |
2 | LYS13 |
2 | CYS14 |
2 | ALA15 |
2 | GLN16 |
2 | HIS18 |
2 | THR28 |
2 | GLY29 |
2 | LEU35 |
2 | THR40 |
2 | PHE46 |
2 | TYR48 |
2 | THR49 |
2 | ASN52 |
2 | TRP59 |
2 | LEU68 |
2 | THR78 |
2 | LYS79 |
2 | MET80 |
2 | ILE81 |
2 | PHE82 |
2 | HOH317 |
site_id | AI9 |
Number of Residues | 21 |
Details | binding site for Di-peptide HEM 2 201 and CYS 2 14 |
Chain | Residue |
2 | PHE10 |
2 | LYS13 |
2 | ALA15 |
2 | GLN16 |
2 | CYS17 |
2 | HIS18 |
2 | THR28 |
2 | LEU35 |
2 | THR40 |
2 | PHE46 |
2 | TYR48 |
2 | THR49 |
2 | ASN52 |
2 | TRP59 |
2 | LEU68 |
2 | THR78 |
2 | LYS79 |
2 | MET80 |
2 | ILE81 |
2 | PHE82 |
2 | HOH317 |
Functional Information from PROSITE/UniProt
site_id | PS00077 |
Number of Residues | 56 |
Details | COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwa.HH |
Chain | Residue | Details |
A | TRP236-HIS291 |
site_id | PS00848 |
Number of Residues | 23 |
Details | COX5B_1 Cytochrome c oxidase subunit Vb, zinc binding region signature. VIWfwlhkgeaqrCpsCGthYKL |
Chain | Residue | Details |
F | VAL69-LEU91 |
site_id | PS01329 |
Number of Residues | 18 |
Details | COX6A Cytochrome c oxidase subunit VIa signature. IRtKpFsWGDGnHTfFhN |
Chain | Residue | Details |
G | ILE55-ASN72 |
site_id | PS00078 |
Number of Residues | 49 |
Details | COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. VlHswavpslglktdaipgrlnqttlmssrpglyygq......CseiCgsnHsfM |
Chain | Residue | Details |
B | VAL159-MET207 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent |
Chain | Residue | Details |
N | MET171-PRO182 | |
N | SER262-GLY269 | |
N | SER401-ASN406 | |
N | LYS479-LYS514 | |
1 | CYS17 | |
2 | CYS14 | |
1 | CYS14 | |
2 | CYS17 | |
S | CYS60 | |
S | CYS62 | |
S | CYS82 | |
S | CYS85 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: axial binding residue => ECO:0000255|PROSITE-ProRule:PRU00433, ECO:0000269|PubMed:5545094 |
Chain | Residue | Details |
P | ALA184-ASP190 | |
P | TYR257-SER261 | |
1 | HIS18 | |
2 | HIS18 | |
F | LYS90 | |
S | LYS37 | |
S | LYS55 | |
S | LYS90 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: axial binding residue |
Chain | Residue | Details |
1 | MET80 | |
2 | MET80 | |
Q | LYS7 | |
Q | LYS38 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N-acetylglycine => ECO:0000269|PubMed:14469771 |
Chain | Residue | Details |
P | GLU153-ASP155 | |
P | LYS224-HIS232 | |
1 | GLY1 | |
2 | GLY1 | |
C | LYS224-HIS232 | |
P | PHE67-THR72 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62894 |
Chain | Residue | Details |
1 | TYR48 | |
B | HIS204 | |
B | MET207 | |
O | HIS161 | |
O | CYS196 | |
O | GLU198 | |
O | CYS200 | |
O | HIS204 | |
O | MET207 | |
1 | TYR97 | |
2 | TYR48 | |
2 | TYR97 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
1 | LYS55 | |
2 | LYS55 | |
A | VAL287-ASP298 | |
N | VAL118-GLY140 | |
N | ARG213-ASP227 | |
N | VAL287-ASP298 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
1 | LYS72 | |
2 | LYS72 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62897 |
Chain | Residue | Details |
1 | LYS99 | |
2 | LYS99 |
site_id | SWS_FT_FI9 |
Number of Residues | 46 |
Details | TRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
C | PHE233-ILE256 | |
P | PHE233-ILE256 |
site_id | SWS_FT_FI10 |
Number of Residues | 32 |
Details | TRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
N | TYR270-ILE286 | |
A | TYR270-ILE286 |
site_id | SWS_FT_FI11 |
Number of Residues | 56 |
Details | TRANSMEM: Helical; Name=VIII => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
N | VAL299-LEU327 | |
A | VAL299-LEU327 |
site_id | SWS_FT_FI12 |
Number of Residues | 14 |
Details | TOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
N | HIS328-SER335 | |
A | HIS328-SER335 |
site_id | SWS_FT_FI13 |
Number of Residues | 42 |
Details | TRANSMEM: Helical; Name=IX => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
N | PRO336-VAL357 | |
A | PRO336-VAL357 |
site_id | SWS_FT_FI14 |
Number of Residues | 48 |
Details | TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
A | SER434-ALA446 | |
N | LEU358-THR370 | |
N | SER434-ALA446 | |
A | LEU358-THR370 |
site_id | SWS_FT_FI15 |
Number of Residues | 58 |
Details | TRANSMEM: Helical; Name=X => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
A | TYR371-PHE400 | |
N | TYR371-PHE400 |
site_id | SWS_FT_FI16 |
Number of Residues | 52 |
Details | TRANSMEM: Helical; Name=XI => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
A | ASP407-LEU433 | |
N | ASP407-LEU433 |
site_id | SWS_FT_FI17 |
Number of Residues | 62 |
Details | TRANSMEM: Helical; Name=XII => ECO:0000269|PubMed:27605664 |
Chain | Residue | Details |
A | TYR447-SER478 | |
N | TYR447-SER478 |
site_id | SWS_FT_FI18 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27605664, ECO:0000305|PubMed:23537388 |
Chain | Residue | Details |
A | SER441 | |
N | GLU40 | |
N | GLY45 | |
N | SER441 | |
A | GLU40 | |
A | GLY45 |
site_id | SWS_FT_FI19 |
Number of Residues | 6 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158 |
Chain | Residue | Details |
N | HIS376 | |
N | HIS378 | |
A | HIS61 | |
A | HIS376 | |
A | HIS378 | |
N | HIS61 |
site_id | SWS_FT_FI20 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158 |
Chain | Residue | Details |
A | ASP369 | |
N | HIS240 | |
N | HIS290 | |
N | HIS291 | |
N | HIS368 | |
N | ASP369 | |
A | HIS240 | |
A | HIS290 | |
A | HIS291 | |
A | HIS368 |
site_id | SWS_FT_FI21 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | TYR244 | |
N | TYR244 |
site_id | SWS_FT_FI22 |
Number of Residues | 2 |
Details | MOD_RES: N-formylmethionine => ECO:0000269|PubMed:2165784 |
Chain | Residue | Details |
A | FME1 | |
N | FME1 |
site_id | SWS_FT_FI23 |
Number of Residues | 4 |
Details | CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000269|PubMed:10338009 |
Chain | Residue | Details |
N | HIS240 | |
N | TYR244 | |
A | HIS240 | |
A | TYR244 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 14 |
Details | M-CSA 124 |
Chain | Residue | Details |
A | HIS61 | metal ligand |
A | ASP91 | proton acceptor, proton donor, proton relay |
A | TRP126 | proton acceptor, proton donor, proton relay |
A | SER156 | proton acceptor, proton donor, proton relay |
A | SER157 | proton acceptor, proton donor, proton relay |
A | HIS240 | covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser |
A | GLU242 | proton acceptor, proton donor, proton relay |
A | TYR244 | covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor |
A | SER255 | proton acceptor, proton donor, proton relay |
A | HIS290 | metal ligand |
A | HIS291 | metal ligand, proton acceptor, proton donor |
A | THR316 | proton acceptor, proton donor, proton relay |
A | LYS319 | proton acceptor, proton donor, proton relay |
A | ARG438 | proton acceptor, proton donor, proton relay |
site_id | MCSA2 |
Number of Residues | 14 |
Details | M-CSA 124 |
Chain | Residue | Details |
N | HIS61 | metal ligand |
N | ASP91 | proton acceptor, proton donor, proton relay |
N | TRP126 | proton acceptor, proton donor, proton relay |
N | SER156 | proton acceptor, proton donor, proton relay |
N | SER157 | proton acceptor, proton donor, proton relay |
N | HIS240 | covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser |
N | GLU242 | proton acceptor, proton donor, proton relay |
N | TYR244 | covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor |
N | SER255 | proton acceptor, proton donor, proton relay |
N | HIS290 | metal ligand |
N | HIS291 | metal ligand, proton acceptor, proton donor |
N | THR316 | proton acceptor, proton donor, proton relay |
N | LYS319 | proton acceptor, proton donor, proton relay |
N | ARG438 | proton acceptor, proton donor, proton relay |