5IXM
The LPS Transporter LptDE from Yersinia pestis, core complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0019867 | cellular_component | outer membrane |
| A | 0061024 | biological_process | membrane organization |
| B | 0001530 | molecular_function | lipopolysaccharide binding |
| B | 0009279 | cellular_component | cell outer membrane |
| B | 0015920 | biological_process | lipopolysaccharide transport |
| B | 0019867 | cellular_component | outer membrane |
| B | 0043165 | biological_process | Gram-negative-bacterium-type cell outer membrane assembly |
| C | 0019867 | cellular_component | outer membrane |
| C | 0061024 | biological_process | membrane organization |
| D | 0001530 | molecular_function | lipopolysaccharide binding |
| D | 0009279 | cellular_component | cell outer membrane |
| D | 0015920 | biological_process | lipopolysaccharide transport |
| D | 0019867 | cellular_component | outer membrane |
| D | 0043165 | biological_process | Gram-negative-bacterium-type cell outer membrane assembly |
| E | 0019867 | cellular_component | outer membrane |
| E | 0061024 | biological_process | membrane organization |
| F | 0001530 | molecular_function | lipopolysaccharide binding |
| F | 0009279 | cellular_component | cell outer membrane |
| F | 0015920 | biological_process | lipopolysaccharide transport |
| F | 0019867 | cellular_component | outer membrane |
| F | 0043165 | biological_process | Gram-negative-bacterium-type cell outer membrane assembly |
| G | 0019867 | cellular_component | outer membrane |
| G | 0061024 | biological_process | membrane organization |
| H | 0001530 | molecular_function | lipopolysaccharide binding |
| H | 0009279 | cellular_component | cell outer membrane |
| H | 0015920 | biological_process | lipopolysaccharide transport |
| H | 0019867 | cellular_component | outer membrane |
| H | 0043165 | biological_process | Gram-negative-bacterium-type cell outer membrane assembly |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue C8E A 601 |
| Chain | Residue |
| A | PHE181 |
| A | LEU213 |
| C | GLY384 |
| C | THR386 |
| C | GLY398 |
| C | GLY399 |
| C | TYR402 |
| C | ALA414 |
| C | C8E609 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue C8E A 602 |
| Chain | Residue |
| A | PHE279 |
| A | ARG349 |
| A | ILE390 |
| A | ASN391 |
| A | ASP392 |
| C | TYR291 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue C8E A 603 |
| Chain | Residue |
| A | GLY265 |
| A | VAL333 |
| A | TYR358 |
| A | PHE360 |
| C | ARG424 |
| C | ILE426 |
| C | LEU428 |
| C | TRP463 |
| C | C8E606 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue C8E A 604 |
| Chain | Residue |
| A | GLY399 |
| A | LEU409 |
| A | ASN413 |
| C | PHE181 |
| C | LEU213 |
| C | LEU215 |
| C | ALA226 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue C8E A 605 |
| Chain | Residue |
| A | TYR289 |
| A | ASN331 |
| A | PHE360 |
| A | HOH771 |
| A | HOH788 |
| C | TYR418 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | binding site for residue C8E C 601 |
| Chain | Residue |
| A | TYR430 |
| A | LYS480 |
| C | LEU215 |
| C | SER216 |
| C | ASN217 |
| C | VAL267 |
| C | PRO285 |
| C | C8E605 |
| C | C8E607 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue C8E C 602 |
| Chain | Residue |
| A | PRO209 |
| A | PRO293 |
| C | PHE279 |
| C | ARG349 |
| C | TRP388 |
| C | ILE390 |
| C | HOH790 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue C8E C 603 |
| Chain | Residue |
| A | MET416 |
| A | TYR418 |
| C | PHE360 |
| C | SER361 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue C8E C 604 |
| Chain | Residue |
| C | LEU54 |
| C | PRO56 |
| C | HIS91 |
| C | PHE101 |
| C | ILE103 |
| C | HOH762 |
| C | HOH775 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue C8E C 605 |
| Chain | Residue |
| A | TYR475 |
| C | PHE269 |
| C | C8E601 |
| D | ARG5 |
| site_id | AD2 |
| Number of Residues | 9 |
| Details | binding site for residue C8E C 606 |
| Chain | Residue |
| A | SER216 |
| A | GLY265 |
| A | LYS266 |
| A | C8E603 |
| C | TYR430 |
| C | SER455 |
| C | THR479 |
| C | LYS480 |
| C | C8E609 |
| site_id | AD3 |
| Number of Residues | 7 |
| Details | binding site for residue C8E C 607 |
| Chain | Residue |
| A | ILE426 |
| A | LEU428 |
| C | GLY265 |
| C | VAL333 |
| C | TYR358 |
| C | PHE360 |
| C | C8E601 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue C8E C 608 |
| Chain | Residue |
| A | SER379 |
| A | TRP382 |
| A | GLY384 |
| A | TYR402 |
| C | PHE181 |
| site_id | AD5 |
| Number of Residues | 8 |
| Details | binding site for residue C8E C 609 |
| Chain | Residue |
| A | LEU215 |
| A | C8E601 |
| C | GLY399 |
| C | LEU409 |
| C | ASN413 |
| C | TYR430 |
| C | TYR432 |
| C | C8E606 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue C8E E 601 |
| Chain | Residue |
| G | GLY398 |
| G | GLY399 |
| G | LEU409 |
| G | GLY412 |
| G | ASN413 |
| E | PHE181 |
| E | LEU215 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue C8E E 602 |
| Chain | Residue |
| E | ALA287 |
| E | TYR289 |
| E | ASN331 |
| E | PHE360 |
| G | TYR418 |
| G | ILE426 |
| site_id | AD8 |
| Number of Residues | 10 |
| Details | binding site for residue C8E E 603 |
| Chain | Residue |
| E | LEU396 |
| E | GLY399 |
| E | LEU409 |
| E | ASN413 |
| E | ALA414 |
| E | TYR430 |
| E | HOH747 |
| G | PHE181 |
| G | LEU213 |
| G | C8E602 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue C8E E 604 |
| Chain | Residue |
| E | ARG349 |
| E | TRP388 |
| G | PRO259 |
| G | PRO293 |
| site_id | AE1 |
| Number of Residues | 7 |
| Details | binding site for residue C8E G 601 |
| Chain | Residue |
| E | VAL211 |
| E | PRO259 |
| E | TYR291 |
| G | PHE279 |
| G | ARG349 |
| G | TRP388 |
| G | ASP392 |
| site_id | AE2 |
| Number of Residues | 10 |
| Details | binding site for residue C8E G 602 |
| Chain | Residue |
| E | TYR430 |
| E | SER455 |
| E | THR479 |
| E | LYS480 |
| E | C8E603 |
| G | LEU215 |
| G | SER216 |
| G | ASN217 |
| G | SER221 |
| G | ILE222 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue C8E G 603 |
| Chain | Residue |
| E | TYR418 |
| G | TYR289 |
| G | PHE360 |
Functional Information from PROSITE/UniProt
| site_id | PS00435 |
| Number of Residues | 11 |
| Details | PEROXIDASE_1 Peroxidases proximal heme-ligand signature. ELRGLSGGHSL |
| Chain | Residue | Details |
| A | GLU529-LEU539 |
