5HNJ

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue NA A 101

Chain	Residue
A	HOH236
C	HOH112
C	HOH115
C	HOH117
C	HOH139
D	HOH142

---

site_id	AC2
Number of Residues	6
Details	binding site for residue NA B 101

Chain	Residue
B	HOH211
B	HOH215
D	HOH135
A	HOH235
A	HOH241
B	HOH205

---

site_id	AC3
Number of Residues	19
Details	binding site for Di-nucleotide A B 3 and RSQ B 4

Chain	Residue
A	G5
A	U6
A	A7
B	U2
B	G5
B	HOH201
B	HOH202
B	HOH204
B	HOH210
B	HOH214
B	HOH217
B	HOH219
B	HOH224
B	HOH225
F	A3
F	HOH102
F	HOH112
F	HOH128
F	HOH143

---

site_id	AC4
Number of Residues	19
Details	binding site for Di-nucleotide RSQ B 4 and G B 5

Chain	Residue
A	A3
A	RSQ4
A	G5
A	U6
B	A3
B	U6
B	HOH201
B	HOH206
B	HOH212
B	HOH217
B	HOH218
B	HOH221
B	HOH222
B	HOH224
B	HOH229
F	A3
F	HOH102
F	HOH128
F	HOH143

---

site_id	AC5
Number of Residues	15
Details	binding site for Di-nucleotide A C 3 and RSQ C 4

Chain	Residue
C	U2
C	G5
C	HOH101
C	HOH103
C	HOH107
C	HOH113
C	HOH114
C	HOH122
C	HOH126
C	HOH128
C	HOH131
D	G5
D	U6
D	A7
E	HOH118

---

site_id	AC6
Number of Residues	17
Details	binding site for Di-nucleotide RSQ C 4 and G C 5

Chain	Residue
C	A3
C	U6
C	HOH101
C	HOH107
C	HOH116
C	HOH120
C	HOH121
C	HOH123
C	HOH126
C	HOH127
C	HOH131
D	A3
D	RSQ4
D	G5
D	U6
E	HOH118
E	HOH131

---

site_id	AC7
Number of Residues	13
Details	binding site for Di-nucleotide A D 3 and RSQ D 4

Chain	Residue
C	G5
C	U6
C	A7
D	U2
D	G5
D	HOH104
D	HOH116
D	HOH117
D	HOH118
D	HOH127
D	HOH128
D	HOH130
D	HOH136

---

site_id	AC8
Number of Residues	15
Details	binding site for Di-nucleotide RSQ D 4 and G D 5

Chain	Residue
D	HOH104
D	HOH105
D	HOH106
D	HOH109
D	HOH111
D	HOH119
D	HOH121
D	HOH127
D	HOH130
D	HOH133
D	HOH134
C	RSQ4
C	G5
D	A3
D	U6

---

site_id	AC9
Number of Residues	17
Details	binding site for Di-nucleotide A E 3 and RSQ E 4

Chain	Residue
E	U2
E	G5
E	HOH102
E	HOH104
E	HOH111
E	HOH114
E	HOH118
E	HOH119
E	HOH131
E	HOH135
E	HOH136
E	HOH137
F	G5
F	U6
F	A7
F	HOH136
F	HOH144

---

site_id	AD1
Number of Residues	18
Details	binding site for Di-nucleotide RSQ E 4 and G E 5

Chain	Residue
E	A3
E	U6
E	HOH102
E	HOH104
E	HOH106
E	HOH119
E	HOH120
E	HOH121
E	HOH128
E	HOH131
E	HOH133
E	HOH136
E	HOH137
F	A3
F	RSQ4
F	G5
F	HOH136
F	HOH144

---

site_id	AD2
Number of Residues	18
Details	binding site for Di-nucleotide A F 3 and RSQ F 4

Chain	Residue
B	RSQ4
E	G5
E	U6
E	A7
F	U2
F	G5
F	HOH102
F	HOH103
F	HOH105
F	HOH106
F	HOH109
F	HOH112
F	HOH115
F	HOH123
F	HOH124
F	HOH130
F	HOH133
F	HOH135

---

site_id	AD3
Number of Residues	16
Details	binding site for Di-nucleotide RSQ F 4 and G F 5

Chain	Residue
E	A3
E	RSQ4
E	G5
F	A3
F	U6
F	HOH104
F	HOH105
F	HOH106
F	HOH108
F	HOH109
F	HOH114
F	HOH126
F	HOH130
F	HOH134
F	HOH135
F	HOH142

---