5H3Q
Crystal Structure of TrkA kinase with ligand
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004672 | molecular_function | protein kinase activity |
| A | 0004713 | molecular_function | protein tyrosine kinase activity |
| A | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006468 | biological_process | protein phosphorylation |
| A | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
| A | 0016020 | cellular_component | membrane |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 17 |
| Details | binding site for residue 7HF A 1001 |
| Chain | Residue |
| A | LEU486 |
| A | PHE589 |
| A | VAL647 |
| A | HIS648 |
| A | GLY667 |
| A | ASP668 |
| A | GLY670 |
| A | HOH1156 |
| A | HOH1162 |
| A | GLY488 |
| A | HIS489 |
| A | ILE490 |
| A | ASN493 |
| A | LYS544 |
| A | GLU560 |
| A | VAL573 |
| A | MET587 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue DTT A 1002 |
| Chain | Residue |
| A | ARG507 |
| A | CYS579 |
| A | THR580 |
| A | GLU581 |
| A | GLY582 |
| A | ARG583 |
| A | PRO584 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue DTT A 1003 |
| Chain | Residue |
| A | TYR701 |
| A | ASP738 |
| A | CYS739 |
| A | GLN742 |
| A | ARG744 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue NA A 1004 |
| Chain | Residue |
| A | ARG649 |
| A | PHE704 |
| A | SER708 |
| A | ASP709 |
| A | HOH1142 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 29 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGAFGKVFlAechnllpeqdkml.....VAVK |
| Chain | Residue | Details |
| A | LEU516-LYS544 |
| site_id | PS00109 |
| Number of Residues | 13 |
| Details | PROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. FVHrDLATRNCLV |
| Chain | Residue | Details |
| A | PHE646-VAL658 |
| site_id | PS00239 |
| Number of Residues | 9 |
| Details | RECEPTOR_TYR_KIN_II Receptor tyrosine kinase class II signature. DIYstdYYR |
| Chain | Residue | Details |
| A | ASP674-ARG682 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Motif: {"description":"DXXLL","evidences":[{"source":"PubMed","id":"26446845","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10028","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 9 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Site: {"description":"Breakpoint for translocation to form TRK-T1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Site: {"description":"Interaction with SHC1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Site: {"description":"Interaction with PLCG1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"15488758","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27676246","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8155326","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"8155326","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"15488758","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8155326","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"15488758","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7510697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8155326","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
