5H1L
Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue GOL A 801 |
Chain | Residue |
A | TYR15 |
A | SER113 |
A | PHE155 |
A | HOH925 |
A | HOH1015 |
A | HOH1045 |
B | A1 |
Functional Information from PROSITE/UniProt
site_id | PS00678 |
Number of Residues | 15 |
Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. CATSsdDgTVKIWDV |
Chain | Residue | Details |
A | CYS82-VAL96 | |
A | LEU395-THR409 | |
A | LEU655-ALA669 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | SITE: Interaction with U4 snRNA => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881600, ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5GXH, ECO:0007744|PDB:5GXI, ECO:0007744|PDB:5H1K, ECO:0007744|PDB:5H1L |
Chain | Residue | Details |
A | ARG33 | |
A | PHE381 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | SITE: Interaction with U4 snRNA => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5H1K |
Chain | Residue | Details |
A | ARG284 | |
A | ARG335 | |
A | TRP422 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | SITE: Interaction with U4 snRNA => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881600, ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5GXI, ECO:0007744|PDB:5H1K, ECO:0007744|PDB:5H1L |
Chain | Residue | Details |
A | ARG359 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | SITE: Interaction with U4 snRNA => ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5H1K |
Chain | Residue | Details |
A | LYS426 | |
A | LYS470 | |
A | GLU556 | |
A | LYS579 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | SITE: Interaction with U4 snRNA and with the 7-methylguanosine cap of RNA molecules => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881601, ECO:0000269|Ref.27, ECO:0007744|PDB:5H1M, ECO:0007744|PDB:5TEF |
Chain | Residue | Details |
A | TYR474 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | SITE: Interaction with U4 snRNA and with the 7-methylguanosine cap of RNA molecules => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881601, ECO:0000269|Ref.27, ECO:0007744|PDB:5H1K, ECO:0007744|PDB:5TEF |
Chain | Residue | Details |
A | LYS641 |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | SITE: Interaction with U4 snRNA and with the 7-methylguanosine cap of RNA molecules => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881601, ECO:0000269|Ref.27, ECO:0007744|PDB:5H1K, ECO:0007744|PDB:5H1M, ECO:0007744|PDB:5TEF |
Chain | Residue | Details |
A | TYR660 |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | SITE: Interaction with U4 snRNA and with the 7-methylguanosine cap of RNA molecules => ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881600, ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5GXH, ECO:0007744|PDB:5H1K |
Chain | Residue | Details |
A | ARG684 |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER48 |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | THR51 |
site_id | SWS_FT_FI11 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER624 |