5GZ3
Structure of D-amino acid dehydrogenase in complex with NADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008839 | molecular_function | 4-hydroxy-tetrahydrodipicolinate reductase |
| A | 0009085 | biological_process | lysine biosynthetic process |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019877 | biological_process | diaminopimelate biosynthetic process |
| A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| B | 0008839 | molecular_function | 4-hydroxy-tetrahydrodipicolinate reductase |
| B | 0009085 | biological_process | lysine biosynthetic process |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019877 | biological_process | diaminopimelate biosynthetic process |
| B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 27 |
| Details | binding site for residue NAP A 1001 |
| Chain | Residue |
| A | GLY10 |
| A | GLY70 |
| A | GLY71 |
| A | SER72 |
| A | ASP75 |
| A | SER92 |
| A | ALA94 |
| A | VAL121 |
| A | GLY122 |
| A | TRP123 |
| A | ASP124 |
| A | TYR11 |
| A | PRO125 |
| A | ASN276 |
| A | THR280 |
| A | HOH1134 |
| A | HOH1145 |
| A | HOH1174 |
| A | HOH1190 |
| A | HOH1191 |
| A | GLY12 |
| A | ASN13 |
| A | LEU14 |
| A | THR35 |
| A | ARG36 |
| A | ARG37 |
| A | CYS69 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 1002 |
| Chain | Residue |
| A | TRP123 |
| A | TRP148 |
| A | GLY149 |
| A | GLY151 |
| A | VAL152 |
| A | ASN249 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 1003 |
| Chain | Residue |
| A | GLY149 |
| A | LYS150 |
| A | PRO248 |
| A | ASN272 |
| A | HOH1212 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 1004 |
| Chain | Residue |
| A | ASN131 |
| A | LEU134 |
| A | PHE269 |
| B | ASN131 |
| B | LEU134 |
| B | PHE269 |
| site_id | AC5 |
| Number of Residues | 27 |
| Details | binding site for residue NAP B 1001 |
| Chain | Residue |
| B | GLY10 |
| B | TYR11 |
| B | GLY12 |
| B | ASN13 |
| B | LEU14 |
| B | THR35 |
| B | ARG36 |
| B | ARG37 |
| B | CYS69 |
| B | GLY70 |
| B | GLY71 |
| B | SER72 |
| B | ASP75 |
| B | SER92 |
| B | ALA94 |
| B | GLY122 |
| B | TRP123 |
| B | ASP124 |
| B | PRO125 |
| B | ASN276 |
| B | THR280 |
| B | HOH1132 |
| B | HOH1139 |
| B | HOH1164 |
| B | HOH1186 |
| B | HOH1197 |
| B | HOH1200 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 1002 |
| Chain | Residue |
| B | ASN143 |
| B | THR144 |
| B | TYR145 |
| B | HOH1181 |
| B | HOH1191 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 26 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| A | TYR11 | |
| A | ILE173 | |
| A | MET199 | |
| A | ASN249 | |
| A | ASN276 | |
| B | TYR11 | |
| B | THR35 | |
| B | CYS69 | |
| B | SER92 | |
| B | ALA94 | |
| B | VAL121 | |
| A | THR35 | |
| B | ASP124 | |
| B | TRP148 | |
| B | LEU154 | |
| B | ILE173 | |
| B | MET199 | |
| B | ASN249 | |
| B | ASN276 | |
| A | CYS69 | |
| A | SER92 | |
| A | ALA94 | |
| A | VAL121 | |
| A | ASP124 | |
| A | TRP148 | |
| A | LEU154 |
