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5GT2

Crystal Structure and Biochemical Features of dye-decolorizing peroxidase YfeX from Escherichia coli O157

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A0098869biological_processcellular oxidant detoxification
B0004601molecular_functionperoxidase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0020037molecular_functionheme binding
B0046872molecular_functionmetal ion binding
B0098869biological_processcellular oxidant detoxification
C0004601molecular_functionperoxidase activity
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0020037molecular_functionheme binding
C0046872molecular_functionmetal ion binding
C0098869biological_processcellular oxidant detoxification
D0004601molecular_functionperoxidase activity
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0020037molecular_functionheme binding
D0046872molecular_functionmetal ion binding
D0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues22
Detailsbinding site for residue HEM A 401
ChainResidue
AASP138
AARG198
AHIS216
AARG233
ALEU247
APHE249
AGLN262
ALEU263
AMET266
AMET278
AHOH522
AVAL143
AHOH563
AHOH579
AHOH667
AASP144
AGLY145
ATHR146
AGLU147
AGLN175
ATRP177
AHIS179

site_idAC2
Number of Residues31
Detailsbinding site for Di-peptide HEM B 401 and HIS B 216
ChainResidue
BASP138
BVAL143
BASP144
BGLY145
BTHR146
BGLU147
BGLN175
BTRP177
BHIS179
BMET195
BILE196
BARG198
BTHR214
BSER215
BLEU217
BTHR218
BARG219
BVAL220
BARG233
BLEU247
BPHE249
BGLN262
BLEU263
BMET266
BASP276
BMET278
BTHR282
BHOH507
BHOH558
BHOH625
BHOH647

site_idAC3
Number of Residues29
Detailsbinding site for Di-peptide HEM C 401 and HIS C 216
ChainResidue
CASP138
CVAL143
CASP144
CGLY145
CTHR146
CGLU147
CGLN175
CTRP177
CHIS179
CMET195
CILE196
CARG198
CTHR214
CSER215
CLEU217
CTHR218
CARG219
CVAL220
CARG233
CLEU247
CPHE249
CGLN262
CLEU263
CMET266
CASP276
CMET278
CHOH525
CHOH567
CHOH641

site_idAC4
Number of Residues27
Detailsbinding site for Di-peptide HEM D 401 and HIS D 216
ChainResidue
DARG233
DLEU247
DPHE249
DGLN262
DLEU263
DMET266
DASP276
DMET278
DHOH503
DHOH579
DASP138
DVAL143
DASP144
DGLY145
DTHR146
DGLU147
DGLN175
DTRP177
DMET195
DILE196
DARG198
DTHR214
DSER215
DLEU217
DTHR218
DARG219
DVAL220

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:Q47KB1
ChainResidueDetails
AASP144
BASP144
CASP144
DASP144

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: proximal binding residue => ECO:0000250|UniProtKB:Q8XBI9
ChainResidueDetails
AHIS216
BHIS216
CHIS216
DHIS216

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PDB entries from 2024-07-24

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