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5GMD

Crystal structure of Sulfolobus solfataricus diphosphomevalonate decarboxylase in complex with ATP-gamma-S

Functional Information from GO Data
ChainGOidnamespacecontents
A0004163molecular_functiondiphosphomevalonate decarboxylase activity
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0008299biological_processisoprenoid biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019287biological_processisopentenyl diphosphate biosynthetic process, mevalonate pathway
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue DP6 A 1001
ChainResidue
AALA14
ASER194
AARG195
AMET198
AASP281
AAGS1002
AHOH1131
AHOH1138
AHOH1141
AHOH1189
ALYS17
ATYR18
ALYS21
AASN28
ASER139
AGLY140
ASER141
AARG144

site_idAC2
Number of Residues20
Detailsbinding site for residue AGS A 1002
ChainResidue
AVAL59
AGLU68
ATYR72
ASER94
ASER106
ASER107
AGLY110
ALYS190
ASER194
ADP61001
AHOH1102
AHOH1135
AHOH1138
AHOH1141
AHOH1152
AHOH1189
AHOH1190
AHOH1226
AHOH1233
AHOH1252

site_idAC3
Number of Residues13
Detailsbinding site for residue AMP A 1003
ChainResidue
AARG22
AGLY23
ALYS155
AGLU157
AGLU159
AGLU216
APHE219
AHOH1105
AHOH1108
AHOH1232
AHOH1243
AHOH1246
AHOH1286

site_idAC4
Number of Residues8
Detailsbinding site for residue SO4 A 1004
ChainResidue
ALEU104
AALA105
AILE182
AASN285
AHIS287
AHOH1119
AHOH1207
AHOH1219

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 A 1005
ChainResidue
AGLY148
AGLN168
AARG171
AHIS172
AASP317
AGLY318
AHOH1266

Functional Information from PROSITE/UniProt
site_idPS00867
Number of Residues8
DetailsCPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LLELNLKS
ChainResidueDetails
ALEU121-SER128

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O23722
ChainResidueDetails
ATYR18
AARG75
ASER139

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PDB entries from 2024-07-31

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