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5GL8

The crystal structure of Nattokinase fragments

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0006508biological_processproteolysis
A0008236molecular_functionserine-type peptidase activity
B0004252molecular_functionserine-type endopeptidase activity
B0006508biological_processproteolysis
B0008236molecular_functionserine-type peptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CA B 301
ChainResidue
BALA169
BTYR171
BTHR174
BHOH435

site_idAC2
Number of Residues6
Detailsbinding site for residue CA B 302
ChainResidue
BVAL81
BGLN2
BASP41
BLEU75
BASN77
BILE79

Functional Information from PROSITE/UniProt
site_idPS00136
Number of Residues12
DetailsSUBTILASE_ASP Serine proteases, subtilase family, aspartic acid active site. VAVIDSGIdssH
ChainResidueDetails
AVAL28-HIS39

site_idPS00137
Number of Residues11
DetailsSUBTILASE_HIS Serine proteases, subtilase family, histidine active site. HGThVAGtIAA
ChainResidueDetails
AHIS64-ALA74

site_idPS00138
Number of Residues11
DetailsSUBTILASE_SER Serine proteases, subtilase family, serine active site. GTSmAtPhVAG
ChainResidueDetails
AGLY219-GLY229

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU01240
ChainResidueDetails
AASP32
AHIS64
BASP32
BHIS64

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU01240, ECO:0000305|PubMed:24121331
ChainResidueDetails
ASER221
BSER221

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0007744|PDB:3VYV, ECO:0007744|PDB:4DWW, ECO:0007744|PDB:5GL8
ChainResidueDetails
AASP41
BLEU75
BASN77
BILE79
BVAL81
BALA169
BTHR174
BASP197
ALEU75
AASN77
AILE79
AVAL81
AALA169
ATHR174
AASP197
BASP41

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:4DWW, ECO:0007744|PDB:5GL8
ChainResidueDetails
ATYR171
BTYR171

224572

PDB entries from 2024-09-04

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