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5GJN

Crystal structure of Lysine decarboxylase from Selenomonas ruminantium in P43212 space group

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004586molecular_functionornithine decarboxylase activity
A0005737cellular_componentcytoplasm
A0006596biological_processpolyamine biosynthetic process
A0008295biological_processspermidine biosynthetic process
A0008923molecular_functionlysine decarboxylase activity
A0009446biological_processputrescine biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0033387biological_processputrescine biosynthetic process from ornithine
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 401
ChainResidue
AGLY219
AGLU255
AGLY257
AARG258
ATYR352
AMG404
AHOH638

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 402
ChainResidue
AHIS68
ASER88

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AARG198
APHE247
APRO248
AASP249
ATHR250

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 404
ChainResidue
AGLY219
APHE220
AGLY257
AARG258
ATYR259
AGOL401
AHOH527

site_idAC5
Number of Residues7
Detailsbinding site for residue 1PE A 405
ChainResidue
AARG43
APRO248
ATHR250
ATRP253
AASN312
AHOH586
AHOH640

site_idAC6
Number of Residues7
Detailsbinding site for residue PGE A 406
ChainResidue
AHIS68
AARG112
AASP132
AASP213
ATRP253
AHOH508
AHOH658

Functional Information from PROSITE/UniProt
site_idPS00878
Number of Residues19
DetailsODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAmKANptpeILslLaglG
ChainResidueDetails
ATYR48-GLY66

site_idPS00879
Number of Residues18
DetailsODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. AeemgmhLtDLDIGGGFP
ChainResidueDetails
AALA204-PRO221

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor; shared with dimeric partner => ECO:0000250
ChainResidueDetails
ACYS323

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS51

224572

PDB entries from 2024-09-04

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