5GJM
Crystal structure of Lysine decarboxylase from Selenomonas ruminantium in C2 space group
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004586 | molecular_function | ornithine decarboxylase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006596 | biological_process | polyamine biosynthetic process |
A | 0008295 | biological_process | spermidine biosynthetic process |
A | 0008923 | molecular_function | lysine decarboxylase activity |
A | 0009446 | biological_process | putrescine biosynthetic process |
A | 0016831 | molecular_function | carboxy-lyase activity |
A | 0033387 | biological_process | putrescine biosynthetic process from ornithine |
B | 0003824 | molecular_function | catalytic activity |
B | 0004586 | molecular_function | ornithine decarboxylase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006596 | biological_process | polyamine biosynthetic process |
B | 0008295 | biological_process | spermidine biosynthetic process |
B | 0008923 | molecular_function | lysine decarboxylase activity |
B | 0009446 | biological_process | putrescine biosynthetic process |
B | 0016831 | molecular_function | carboxy-lyase activity |
B | 0033387 | biological_process | putrescine biosynthetic process from ornithine |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue GOL A 401 |
Chain | Residue |
A | ILE296 |
A | TRP301 |
A | THR302 |
A | TYR303 |
A | LEU329 |
A | TYR330 |
A | HOH534 |
Functional Information from PROSITE/UniProt
site_id | PS00878 |
Number of Residues | 19 |
Details | ODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAmKANptpeILslLaglG |
Chain | Residue | Details |
A | TYR48-GLY66 |
site_id | PS00879 |
Number of Residues | 18 |
Details | ODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. AeemgmhLtDLDIGGGFP |
Chain | Residue | Details |
A | ALA204-PRO221 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton donor; shared with dimeric partner => ECO:0000250 |
Chain | Residue | Details |
A | CYS323 | |
B | CYS323 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250 |
Chain | Residue | Details |
A | LYS51 | |
B | LYS51 |