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5G1A

Bordetella Alcaligenes HDAH bound to PFSAHA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004407molecular_functionhistone deacetylase activity
A0016787molecular_functionhydrolase activity
A0040029biological_processepigenetic regulation of gene expression
A0046872molecular_functionmetal ion binding
B0004407molecular_functionhistone deacetylase activity
B0016787molecular_functionhydrolase activity
B0040029biological_processepigenetic regulation of gene expression
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 370
ChainResidue
AASP180
AHIS182
AASP268
A7H1373

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 371
ChainResidue
AASP178
AASP180
AHIS182
ASER201
ALEU202

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K A 372
ChainResidue
ATRP191
AASP194
AVAL197
ATHR199
ATYR226
AHOH2300
AHOH2306

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 7H1 A 373
ChainResidue
ALEU21
AILE100
AHIS142
AHIS143
AGLY151
APHE152
AASP180
AHIS182
APHE208
AASP268
ALEU275
ATYR312
APHE341
AZN370
APEG379
AHOH2212
AHOH2213
AHOH2468

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 1PE A 374
ChainResidue
AARG173
APRO195
AASN222
ATYR226
AHOH2291
AHOH2309
AHOH2312
AHOH2469
AHOH2470

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG A 375
ChainResidue
AHIS205
AHOH2472
AHOH2473

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 376
ChainResidue
ATHR92
AHOH2202
AHOH2475
AHOH2476
BALA23
BHOH2055
BHOH2203

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 377
ChainResidue
AARG355

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PEG A 378
ChainResidue
AGLN188
AGLU217

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 379
ChainResidue
APRO337
ATYR338
A7H1373
AHOH2478

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 370
ChainResidue
BASP180
BHIS182
BASP268
B7H1373

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 371
ChainResidue
BASP178
BASP180
BHIS182
BSER201
BLEU202

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 372
ChainResidue
BTRP191
BASP194
BVAL197
BTHR199
BTYR226
BHOH2282
BHOH2290

site_idBC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 7H1 B 373
ChainResidue
BLEU21
BILE100
BHIS142
BHIS143
BGLY151
BPHE152
BASP180
BHIS182
BPHE208
BASP268
BTYR312
BPHE341
BZN370
BPEG376
BHOH2194

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE B 374
ChainResidue
BGLU172
BARG173
BPRO195
BTYR226
BHOH2145
BHOH2273

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG B 375
ChainResidue
BTHR92
BHOH2207
BHOH2450
BHOH2451
BHOH2452
AALA23
AHOH2061

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG B 376
ChainResidue
BMET30
BPRO337
BTYR338
B7H1373

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG B 377
ChainResidue
BASP283
BHIS339
BHOH2372

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"UniProtKB","id":"Q48935","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27756124","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5G1C","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Polarizes the scissile carbonyl of the substrate","evidences":[{"source":"UniProtKB","id":"Q48935","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

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PDB entries from 2025-08-27

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