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5G0I

Crystal structure of Danio rerio HDAC6 CD1 and CD2 (linker cleaved) in complex with Nexturastat A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1802
ChainResidue
AASP612
AHIS614
AASP705
AN4R1808
AHOH2316

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1803
ChainResidue
AHOH2111
AASP230
AHIS232
AASP323
AN4R1809

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 1802
ChainResidue
BASP230
BHIS232
BASP323
BN4R1809
BHOH2058

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 1803
ChainResidue
BASP612
BHIS614
BASP705
BN4R1808
BHOH2171

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1804
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 1805
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH2339
AHOH2344

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1806
ChainResidue
AASP228
AASP230
AHIS232
ASER251
AVAL252

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 1807
ChainResidue
APHE241
AASP244
AVAL247
ATYR280
AHOH2133
AHOH2137

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 1804
ChainResidue
BASP228
BASP230
BHIS232
BSER251
BVAL252

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 1805
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 1806
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH2187
BHOH2189

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 1807
ChainResidue
BPHE241
BASP244
BVAL247
BTYR280
BHOH2068

site_idBC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE N4R A 1808
ChainResidue
AHIS463
APRO464
ASER531
APRO571
AHIS574
AGLY582
APHE583
AHIS614
APHE643
AASP705
ALEU712
ATYR745
AHIS771
AZN1802
AHOH2316

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE N4R A 1809
ChainResidue
AHIS82
APRO83
ASER150
AHIS193
AGLY201
APHE202
AHIS232
ATRP261
AASP323
ATYR363
AZN1803
AHOH2111
AHOH2191

site_idBC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE N4R B 1808
ChainResidue
BASP705
BLEU712
BTYR745
BZN1803
BHOH2171
BPRO464
BSER531
BPRO571
BHIS574
BGLY582
BPHE583
BHIS614
BPHE643

site_idBC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE N4R B 1809
ChainResidue
BHIS82
BPRO83
BSER150
BHIS193
BGLY201
BPHE202
BHIS232
BTRP261
BASP323
BLYS330
BTYR363
BZN1802
BHOH2058

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1810
ChainResidue
AASN523
AASP527
AILE532
AHOH2293

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1811
ChainResidue
ATHR61
AGLY62
ATHR63
AARG181
ALEU379
AHOH2425

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1810
ChainResidue
BTHR61
BGLY62
BTHR63
BARG181
BLEU379
BHOH2205

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PDB entries from 2024-07-17

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