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5G0G

Crystal structure of Danio rerio HDAC6 CD1 in complex with trichostatin A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1419
ChainResidue
AASP230
AHIS232
AASP323
ATSN1427

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 1420
ChainResidue
AHOH2150
APHE241
AASP244
AVAL247
ATYR280
AHOH2149

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1421
ChainResidue
AASP228
AASP230
AHIS232
ASER251
AVAL252

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1422
ChainResidue
ATRP78
ALEU153
AHOH2017

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1423
ChainResidue
AARG181
AHOH2215

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1424
ChainResidue
ASER293
ASER336
APRO388
ASER389
ASER390

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1425
ChainResidue
ALYS174
AGLN179

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1426
ChainResidue
ACYS394
AGLU395

site_idAC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE TSN A 1427
ChainResidue
ASER150
AHIS192
AHIS193
AGLY201
APHE202
AASP230
AHIS232
AASP257
AGLY258
ASER259
AHIS263
ALYS265
AASP323
ALYS330
ATYR363
AZN1419

237735

PDB entries from 2025-06-18

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