5FYV
Crystal structure of the catalytic domain of human JARID1B in complex with oxaloacetate
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 1754 |
| Chain | Residue |
| A | CYS692 |
| A | CYS695 |
| A | CYS715 |
| A | HIS718 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN A 1755 |
| Chain | Residue |
| A | HOH2172 |
| A | HIS499 |
| A | GLU501 |
| A | HIS587 |
| A | OAA1774 |
| A | HOH2166 |
| site_id | AC3 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE EPE A 1756 |
| Chain | Residue |
| A | ILE500 |
| A | TRP504 |
| A | GLU531 |
| A | MET534 |
| A | LEU541 |
| A | LEU552 |
| A | ARG584 |
| A | TYR586 |
| A | HIS617 |
| A | TYR618 |
| A | LEU621 |
| A | ARG623 |
| A | HOH2163 |
| A | HOH2171 |
| A | HOH2206 |
| A | HOH2310 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 1757 |
| Chain | Residue |
| A | ASP630 |
| A | CYS699 |
| A | PHE700 |
| A | MET701 |
| A | SER702 |
| A | HOH2234 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 1758 |
| Chain | Residue |
| A | ARG666 |
| A | THR737 |
| A | HOH2303 |
| A | HOH2312 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1759 |
| Chain | Residue |
| A | ARG612 |
| A | ASP630 |
| A | MET658 |
| A | GLU662 |
| A | LEU665 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 1760 |
| Chain | Residue |
| A | PRO30 |
| A | VAL568 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 1761 |
| Chain | Residue |
| A | ASP688 |
| A | GLU689 |
| A | ARG690 |
| A | GLN691 |
| A | VAL693 |
| A | GLY711 |
| A | LEU713 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 1762 |
| Chain | Residue |
| A | GLY524 |
| A | TYR525 |
| A | HOH2189 |
| A | HOH2313 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1763 |
| Chain | Residue |
| A | ARG670 |
| A | VAL674 |
| A | ILE675 |
| A | HOH2130 |
| A | HOH2256 |
| site_id | BC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO A 1764 |
| Chain | Residue |
| A | HIS564 |
| site_id | BC3 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE EDO A 1765 |
| Chain | Residue |
| A | TYR425 |
| A | GLY426 |
| A | TYR488 |
| A | VAL489 |
| A | GLY490 |
| A | SER494 |
| A | SER495 |
| A | ASN591 |
| A | OAA1774 |
| A | HOH2184 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 1766 |
| Chain | Residue |
| A | TRP486 |
| A | TYR488 |
| A | ALA599 |
| A | VAL600 |
| A | ASN601 |
| A | OAA1774 |
| A | HOH2166 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1767 |
| Chain | Residue |
| A | HIS399 |
| A | GLY514 |
| A | GLU515 |
| A | HOH2314 |
| A | HOH2315 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1768 |
| Chain | Residue |
| A | GLU683 |
| A | LEU684 |
| A | GLU689 |
| A | HOH2276 |
| A | HOH2316 |
| site_id | BC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1769 |
| Chain | Residue |
| A | GLU631 |
| A | CYS634 |
| A | LYS635 |
| A | PHE700 |
| A | TYR736 |
| site_id | BC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 1770 |
| Chain | Residue |
| A | LYS639 |
| A | LYS731 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 1771 |
| Chain | Residue |
| A | PHE496 |
| A | CYS497 |
| A | HIS499 |
| site_id | CC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 1772 |
| Chain | Residue |
| A | GLU424 |
| A | MET385 |
| A | THR422 |
| site_id | CC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO A 1773 |
| Chain | Residue |
| A | HOH2281 |
| site_id | CC3 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE OAA A 1774 |
| Chain | Residue |
| A | TYR488 |
| A | PHE496 |
| A | HIS499 |
| A | ASN509 |
| A | LYS517 |
| A | TRP519 |
| A | HIS587 |
| A | MN1755 |
| A | EDO1765 |
| A | EDO1766 |
| A | HOH2165 |
| A | HOH2166 |
| A | HOH2172 |
| A | HOH2184 |
| site_id | CC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL A 1775 |
| Chain | Residue |
| A | LEU90 |
| A | ASN91 |
| A | LEU413 |
| A | THR416 |
| A | GLU419 |
| A | HOH2077 |
| A | HOH2079 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PO4 A 1776 |
| Chain | Residue |
| A | HIS622 |
| A | LYS694 |
| A | HIS718 |
| A | HOH2222 |
| A | HOH2226 |
| A | HOH2317 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 41 |
| Details | Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 166 |
| Details | Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 52 |
| Details | Zinc finger: {"description":"C5HC2","evidences":[{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27214403","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28262558","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P29375","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27214403","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"28262558","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
