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5FYV

Crystal structure of the catalytic domain of human JARID1B in complex with oxaloacetate

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1754
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 1755
ChainResidue
AHOH2172
AHIS499
AGLU501
AHIS587
AOAA1774
AHOH2166

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE EPE A 1756
ChainResidue
AILE500
ATRP504
AGLU531
AMET534
ALEU541
ALEU552
AARG584
ATYR586
AHIS617
ATYR618
ALEU621
AARG623
AHOH2163
AHOH2171
AHOH2206
AHOH2310

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1757
ChainResidue
AASP630
ACYS699
APHE700
AMET701
ASER702
AHOH2234

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1758
ChainResidue
AARG666
ATHR737
AHOH2303
AHOH2312

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1759
ChainResidue
AARG612
AASP630
AMET658
AGLU662
ALEU665

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1760
ChainResidue
APRO30
AVAL568

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1761
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU713

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1762
ChainResidue
AGLY524
ATYR525
AHOH2189
AHOH2313

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1763
ChainResidue
AARG670
AVAL674
AILE675
AHOH2130
AHOH2256

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1764
ChainResidue
AHIS564

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO A 1765
ChainResidue
ATYR425
AGLY426
ATYR488
AVAL489
AGLY490
ASER494
ASER495
AASN591
AOAA1774
AHOH2184

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1766
ChainResidue
ATRP486
ATYR488
AALA599
AVAL600
AASN601
AOAA1774
AHOH2166

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1767
ChainResidue
AHIS399
AGLY514
AGLU515
AHOH2314
AHOH2315

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1768
ChainResidue
AGLU683
ALEU684
AGLU689
AHOH2276
AHOH2316

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1769
ChainResidue
AGLU631
ACYS634
ALYS635
APHE700
ATYR736

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1770
ChainResidue
ALYS639
ALYS731

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1771
ChainResidue
APHE496
ACYS497
AHIS499

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1772
ChainResidue
AGLU424
AMET385
ATHR422

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1773
ChainResidue
AHOH2281

site_idCC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE OAA A 1774
ChainResidue
ATYR488
APHE496
AHIS499
AASN509
ALYS517
ATRP519
AHIS587
AMN1755
AEDO1765
AEDO1766
AHOH2165
AHOH2166
AHOH2172
AHOH2184

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL A 1775
ChainResidue
ALEU90
AASN91
ALEU413
ATHR416
AGLU419
AHOH2077
AHOH2079

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 1776
ChainResidue
AHIS622
ALYS694
AHIS718
AHOH2222
AHOH2226
AHOH2317

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

218853

PDB entries from 2024-04-24

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