5FY8
Crystal structure of human JMJD2A in complex with D-threo-isocitrate
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NI A 501 |
Chain | Residue |
A | HIS188 |
A | GLU190 |
A | HIS276 |
A | N811354 |
A | HOH2050 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 502 |
Chain | Residue |
A | CYS234 |
A | HIS240 |
A | CYS306 |
A | CYS308 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NI B 501 |
Chain | Residue |
B | HIS188 |
B | GLU190 |
B | HIS276 |
B | N811354 |
B | HOH2048 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 502 |
Chain | Residue |
B | CYS234 |
B | HIS240 |
B | CYS306 |
B | CYS308 |
site_id | AC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE N81 A 1354 |
Chain | Residue |
A | TYR132 |
A | TYR177 |
A | PHE185 |
A | HIS188 |
A | GLU190 |
A | SER196 |
A | ASN198 |
A | TRP208 |
A | LYS241 |
A | HIS276 |
A | SER288 |
A | NI501 |
A | HOH2050 |
site_id | AC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE N81 B 1354 |
Chain | Residue |
B | TYR132 |
B | TYR177 |
B | PHE185 |
B | HIS188 |
B | GLU190 |
B | SER196 |
B | ASN198 |
B | LYS206 |
B | TRP208 |
B | HIS276 |
B | SER288 |
B | NI501 |
B | HOH2048 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE DMS A 1355 |
Chain | Residue |
A | PHE227 |
A | PRO228 |
A | GLY229 |
A | SER230 |
A | HOH2068 |
B | LYS105 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE DMS B 1355 |
Chain | Residue |
A | LYS105 |
B | PHE226 |
B | PHE227 |
B | PRO228 |
B | GLY229 |
B | SER230 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 1356 |
Chain | Residue |
B | GLU235 |
B | ALA236 |
B | PHE237 |
B | LEU238 |
B | HOH2059 |
B | HOH2071 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 1356 |
Chain | Residue |
A | CYS234 |
A | GLU235 |
A | ALA236 |
A | PHE237 |
A | LEU238 |
A | HOH2085 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 1357 |
Chain | Residue |
A | LEU65 |
A | GLY138 |
A | THR139 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B 1357 |
Chain | Residue |
B | ARG295 |
B | ASP342 |
B | LEU345 |
B | HOH2073 |
site_id | BC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B 1358 |
Chain | Residue |
B | ASP191 |
B | MET192 |
B | ARG239 |
B | LEU305 |
B | CYS306 |
B | MET312 |
B | VAL313 |
B | HOH2076 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 1358 |
Chain | Residue |
A | TYR253 |
A | GLY254 |
A | HOH2077 |
A | HOH2108 |
B | LYS259 |
B | VAL260 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 1359 |
Chain | Residue |
B | ILE67 |
B | PRO68 |
B | ALA69 |
B | ALA134 |
B | ASP135 |
B | VAL136 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:16677698 |
Chain | Residue | Details |
A | TYR132 | |
A | ASN198 | |
A | LYS206 | |
B | TYR132 | |
B | ASN198 | |
B | LYS206 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 |
Chain | Residue | Details |
A | HIS188 | |
A | HIS276 | |
B | HIS188 | |
B | HIS276 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 |
Chain | Residue | Details |
A | GLU190 | |
B | GLU190 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I |
Chain | Residue | Details |
A | CYS234 | |
A | HIS240 | |
A | CYS306 | |
A | CYS308 | |
B | CYS234 | |
B | HIS240 | |
B | CYS306 | |
B | CYS308 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2 |
Chain | Residue | Details |
A | LYS241 | |
B | LYS241 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: N-acetylalanine => ECO:0007744|PubMed:19413330 |
Chain | Residue | Details |
A | ALA2 | |
B | ALA2 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 370 |
Chain | Residue | Details |
A | GLY170 | hydrogen bond acceptor, steric role |
A | TYR177 | hydrogen bond donor, steric role |
A | HIS188 | metal ligand |
A | GLU190 | attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role |
A | HIS276 | metal ligand |
A | SER288 | hydrogen bond donor, steric role |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 370 |
Chain | Residue | Details |
B | GLY170 | hydrogen bond acceptor, steric role |
B | TYR177 | hydrogen bond donor, steric role |
B | HIS188 | metal ligand |
B | GLU190 | attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role |
B | HIS276 | metal ligand |
B | SER288 | hydrogen bond donor, steric role |