Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FWE

JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H4(1-15)R3me2s PEPTIDE

Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI A 1355
ChainResidue
AHIS188
AGLU190
AHIS276
AOGA1358
AHOH2102

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1356
ChainResidue
ACYS234
AHIS240
ACYS306
ACYS308

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1357
ChainResidue
APHE227
AGLY229
ASER230

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OGA A 1358
ChainResidue
ATYR132
APHE185
AHIS188
AGLU190
ASER196
AASN198
ALYS206
ATRP208
ATHR270
AHIS276
ANI1355
AHOH2102
AHOH2189

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI B 1356
ChainResidue
BHIS188
BGLU190
BHIS276
BOGA1359
BHOH2112

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1357
ChainResidue
BCYS234
BHIS240
BCYS306
BCYS308

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1358
ChainResidue
BPHE227
BPRO228
BGLY229

site_idAC8
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OGA B 1359
ChainResidue
BTYR132
BPHE185
BHIS188
BGLU190
BSER196
BASN198
BLYS206
BTRP208
BTHR270
BHIS276
BNI1356
BHOH2202
D2MR3

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 1360
ChainResidue
BTYR59
BARG98

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:17967882
ChainResidueDetails
CSER1
DSER1
ALYS206
BTYR132
BASN198
BLYS206

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Symmetric dimethylarginine; by PRMT5 and PRMT7; alternate => ECO:0000250|UniProtKB:P62806
ChainResidueDetails
C2MR3
D2MR3
BHIS188
BHIS276

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-lactoyllysine; alternate => ECO:0000269|PubMed:31645732
ChainResidueDetails
CLYS5
DLYS5

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-propionyllysine; alternate => ECO:0000269|PubMed:17267393
ChainResidueDetails
CLYS8
DLYS8
ACYS306
ACYS308
BCYS234
BHIS240
BCYS306
BCYS308

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435
ChainResidueDetails
CLYS12
DLYS12

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447
ChainResidueDetails
CLYS12
BALA2
DLYS12

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
AGLY170hydrogen bond acceptor, steric role
ATYR177hydrogen bond donor, steric role
AHIS188metal ligand
AGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
AHIS276metal ligand
ASER288hydrogen bond donor, steric role

site_idMCSA2
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
BGLY170hydrogen bond acceptor, steric role
BTYR177hydrogen bond donor, steric role
BHIS188metal ligand
BGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
BHIS276metal ligand
BSER288hydrogen bond donor, steric role

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon