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5FW2

Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004520molecular_functionDNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0043571biological_processmaintenance of CRISPR repeat elements
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 1182
ChainResidue
AG21
AHOH2001
AHOH2022
AHOH2023
AHOH2037
AHOH2038

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 1183
ChainResidue
AU12
AG13
AHOH2012

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1084
ChainResidue
AU50
AHOH2052
AHOH2053
AHOH2054
AHOH2055
AHOH2064

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2366
ChainResidue
AA68
AHOH2081
BGLN1350
BHOH2075
BHOH2105

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2367
ChainResidue
BGLU584
BARG586
BASN588
BHOH2052
BHOH2053

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 2368
ChainResidue
AA65
AU66
AHOH2072
AHOH2073
AHOH2077
AHOH2078
BTHR1102

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 2369
ChainResidue
BLEU623
BTHR624
BPHE626
BTYR656
BHOH2057
CHOH2007

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2370
ChainResidue
BGLY361
BTYR362
BGLY365
BGLY366
BALA367

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE K B 2371
ChainResidue
BALA640
BPHE643

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K B 2372
ChainResidue
AHOH2073
BTHR1102
BHOH2001
BHOH2007

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K B 2373
ChainResidue
BLYS111
BHOH2011
BHOH2012
BHOH2013

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1083
ChainResidue
AHOH2021
AHOH2023
AHOH2024
AHOH2087

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA10

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA840

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24505130
ChainResidueDetails
BALA10
BGLU762
BGLU766
BHIS983
BHIS1297
BASP1328

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PDB entries from 2024-09-11

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