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5FRM

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ384 (compound 4a)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1376
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1377
ChainResidue
AASP128
AASP185
AHOH2027
AHOH2028
DWA51018

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1378
ChainResidue
AASP128
AGLU221
AHOH2029
DWA51018

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1299
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE WA5 D 1018
ChainResidue
AASP128
AASP185
APRO214
AGLN215
AGLU221
AMG1377
AMG1378
AMES1380
ASO41383
AHOH2028
CDG4
DDC16
DDA17

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1379
ChainResidue
APRO135
ASER136
AGLN137
ALYS241

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MES A 1380
ChainResidue
AGLN186
AGLY187
APRO211
ATYR212
ASO41383
DWA51018

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1381
ChainResidue
ASER225
ATHR232
AARG336
AHOH2017
DDC16

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1382
ChainResidue
AGLN60
ALEU79
ATYR80
APRO277
APHE278

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1383
ChainResidue
AGLY187
AALA188
AMES1380
DDA17
DWA51018

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1384
ChainResidue
ALYS228
ASER332
ALEU333
AARG336

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1385
ChainResidue
AHIS338
ALYS339
AHIS357

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1386
ChainResidue
ATHR163
ASER164
AHOH2037

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 1300
ChainResidue
ALEU292
AGLN296
BTYR263
BGLY271
BASP273

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1387
ChainResidue
AASP116
CDT3

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 1020
ChainResidue
ATYR303
AGOL1388
AHOH2067
CDC6
CDA7
CDT8
DDC11

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1301
ChainResidue
ASER175
BLEU155
BPRO157
BTYR243
BPRO247
BGLN250

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1388
ChainResidue
AARG114
ATYR303
APRO305
AHOH2095
CDC6
CGOL1020

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP123
AASP185
BASP123
BASP185

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PDB entries from 2025-06-18

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