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5FP9

Crystal structure of human KDM4D in complex with 3-aminopyridine-4- carboxylic acid

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 350
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO A 360
ChainResidue
AHOH2384
AHIS192
AGLU194
AHIS280
A4SV1342
AHOH2379

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1341
ChainResidue
APHE31
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH2076
AHOH2078

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 4SV A 1342
ChainResidue
ATYR136
APHE189
AHIS192
ALYS210
ATRP212
AHIS280
ACO360
AHOH2379
AHOH2384

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1343
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH2310
AHOH2536

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1344
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH2163
AHOH2165
AHOH2175

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1345
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH2310

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1346
ChainResidue
AARG102
AHIS103
AASN106
AHOH2247
AHOH2537
AHOH2538
AHOH2539

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1347
ChainResidue
AGLN116
AGLN116
AASN117
AASN117

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1348
ChainResidue
AASP302
ATYR303
AMET306

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1349
ChainResidue
ATYR179
ATYR181
AGLU194
AALA292
AILE293
AASN294
AHOH2535

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-09-18

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