5FP9
Crystal structure of human KDM4D in complex with 3-aminopyridine-4- carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-12-08 |
Detector | SATURN A200 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 71.416, 71.416, 150.292 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 64.500 - 2.000 |
R-factor | 0.15897 |
Rwork | 0.157 |
R-free | 0.21141 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | NONE |
RMSD bond length | 0.005 |
RMSD bond angle | 1.035 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.030 |
High resolution limit [Å] | 2.030 | 2.000 |
Rmerge | 0.430 | 0.430 |
Number of reflections | 25162 | |
<I/σ(I)> | 16.1 | 4.4 |
Completeness [%] | 92.5 | 94 |
Redundancy | 6 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7.4 | 0.1M HEPES, PH 7.4, 2.2M AMSO4 |