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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5FGW

Structure of Sda1 nuclease with bound zinc ion

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003676	molecular_function	nucleic acid binding
A	0016787	molecular_function	hydrolase activity
A	0046872	molecular_function	metal ion binding
B	0003676	molecular_function	nucleic acid binding
B	0016787	molecular_function	hydrolase activity
B	0046872	molecular_function	metal ion binding
C	0003676	molecular_function	nucleic acid binding
C	0016787	molecular_function	hydrolase activity
C	0046872	molecular_function	metal ion binding
D	0003676	molecular_function	nucleic acid binding
D	0016787	molecular_function	hydrolase activity
D	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	binding site for residue ZN A 301

Chain	Residue
A	SER294
B	ASN211
B	HOH430
B	HOH431
B	HOH436

site_id	AC2
Number of Residues	5
Details	binding site for residue ZN A 302

Chain	Residue
B	SER294
A	ASN211
A	HOH426
A	HOH436
A	HOH441

site_id	AC3
Number of Residues	5
Details	binding site for residue ZN A 303

Chain	Residue
A	HIS51
A	HIS56
A	HOH454
A	HOH487
A	HOH493

site_id	AC4
Number of Residues	7
Details	binding site for residue ZN A 304

Chain	Residue
A	SER120
A	GLU125
A	ASP192
A	HOH401
A	HOH419
A	HOH423
A	HOH464

site_id	AC5
Number of Residues	5
Details	binding site for residue ZN A 305

Chain	Residue
A	GLU125
A	HOH409
A	HOH435
A	HOH485
A	HOH495

site_id	AC6
Number of Residues	3
Details	binding site for residue ZN A 306

Chain	Residue
A	HIS95
A	HOH492
D	HIS95

site_id	AC7
Number of Residues	4
Details	binding site for residue ZN A 307

Chain	Residue
A	HIS231
A	HOH486
A	HOH490
A	HOH497

site_id	AC8
Number of Residues	5
Details	binding site for residue ZN A 308

Chain	Residue
A	HIS239
A	TYR241
A	SER265
A	HOH489
A	HOH496

site_id	AC9
Number of Residues	1
Details	binding site for residue CL A 309

Chain	Residue
A	GLY281

site_id	AD1
Number of Residues	2
Details	binding site for residue CL A 310

Chain	Residue
A	ASP64
A	LYS243

site_id	AD2
Number of Residues	8
Details	binding site for residue ACT A 311

Chain	Residue
A	ASN283
A	LEU292
A	SER293
A	SER294
A	HOH406
A	HOH418
B	TRP127
B	ARG186

site_id	AD3
Number of Residues	7
Details	binding site for residue ACT A 312

Chain	Residue
A	TRP127
A	ARG186
A	HOH404
B	ASN283
B	LEU292
B	SER293
B	SER294

site_id	AD4
Number of Residues	4
Details	binding site for residue ZN B 301

Chain	Residue
B	HIS51
B	HIS56
B	ACT310
B	HOH490

site_id	AD5
Number of Residues	6
Details	binding site for residue ZN B 302

Chain	Residue
B	SER120
B	GLU125
B	ASP192
B	HOH412
B	HOH413
B	HOH448

site_id	AD6
Number of Residues	4
Details	binding site for residue ZN B 303

Chain	Residue
B	GLU125
B	HOH406
B	HOH467
B	HOH479

site_id	AD7
Number of Residues	2
Details	binding site for residue ZN B 304

Chain	Residue
B	HIS155
D	HOH477

site_id	AD8
Number of Residues	4
Details	binding site for residue ZN B 305

Chain	Residue
B	HIS231
B	HOH441
B	HOH493
B	HOH495

site_id	AD9
Number of Residues	2
Details	binding site for residue ZN B 306

Chain	Residue
B	HIS239
B	TYR241

site_id	AE1
Number of Residues	2
Details	binding site for residue ZN B 307

Chain	Residue
B	GLU76
B	HOH483

site_id	AE2
Number of Residues	3
Details	binding site for residue ZN B 308

Chain	Residue
B	ASP152
B	HOH487
B	HOH499

site_id	AE3
Number of Residues	1
Details	binding site for residue CL B 309

Chain	Residue
B	ASP64

site_id	AE4
Number of Residues	3
Details	binding site for residue ACT B 310

Chain	Residue
B	HIS51
B	HIS56
B	ZN301

site_id	AE5
Number of Residues	4
Details	binding site for residue NA B 311

Chain	Residue
B	GLU132
B	ARG186
B	HOH475
B	HOH485

site_id	AE6
Number of Residues	5
Details	binding site for residue ZN C 301

Chain	Residue
C	SER294
D	ASN211
D	HOH429
D	HOH442
D	HOH447

site_id	AE7
Number of Residues	5
Details	binding site for residue ZN C 302

Chain	Residue
C	HOH447
C	HOH449
D	SER294
C	ASN211
C	HOH433

site_id	AE8
Number of Residues	3
Details	binding site for residue ZN C 303

Chain	Residue
C	ASP192
C	HOH402
C	HOH419

site_id	AE9
Number of Residues	4
Details	binding site for residue ZN C 304

Chain	Residue
C	HIS51
C	HIS56
C	ACT310
C	HOH504

site_id	AF1
Number of Residues	4
Details	binding site for residue ZN C 305

Chain	Residue
C	HIS231
C	HOH498
C	HOH505
C	HOH508

site_id	AF2
Number of Residues	3
Details	binding site for residue ZN C 306

Chain	Residue
C	HIS239
C	TYR241
C	HOH512

site_id	AF3
Number of Residues	5
Details	binding site for residue EDO C 307

Chain	Residue
C	ASP100
C	SER105
C	TYR248
C	HOH412
C	HOH425

site_id	AF4
Number of Residues	1
Details	binding site for residue CL C 308

Chain	Residue
C	TRP127

site_id	AF5
Number of Residues	4
Details	binding site for residue ACT C 309

Chain	Residue
C	GLU125
C	GLU128
C	ARG197
C	HOH461

site_id	AF6
Number of Residues	3
Details	binding site for residue ACT C 310

Chain	Residue
C	HIS51
C	HIS56
C	ZN304

site_id	AF7
Number of Residues	4
Details	binding site for residue ZN D 301

Chain	Residue
D	HIS51
D	HIS56
D	ACT308
D	HOH501

site_id	AF8
Number of Residues	3
Details	binding site for residue ZN D 302

Chain	Residue
B	HOH446
B	HOH486
D	HIS155

site_id	AF9
Number of Residues	5
Details	binding site for residue ZN D 303

Chain	Residue
D	HIS231
D	HOH503
D	HOH505
D	HOH507
D	HOH508

site_id	AG1
Number of Residues	3
Details	binding site for residue ZN D 304

Chain	Residue
D	HIS239
D	TYR241
D	HOH504

site_id	AG2
Number of Residues	2
Details	binding site for residue EDO D 305

Chain	Residue
D	THR149
D	ASP152

site_id	AG3
Number of Residues	7
Details	binding site for residue EDO D 306

Chain	Residue
C	SER294
D	GLY188
D	ILE190
D	ASP192
D	ARG197
D	ASN202
D	HOH405

site_id	AG4
Number of Residues	1
Details	binding site for residue CL D 307

Chain	Residue
D	ASP64

site_id	AG5
Number of Residues	3
Details	binding site for residue ACT D 308

Chain	Residue
D	HIS51
D	HIS56
D	ZN301

site_id	AG6
Number of Residues	2
Details	binding site for residue NA D 309

Chain	Residue
D	GLU125
D	HOH423

247947

PDB entries from 2026-01-21

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