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5EY1

Crystal structure of CodY from Staphylococcus aureus with GTP and Ile

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003700molecular_functionDNA-binding transcription factor activity
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0006355biological_processregulation of DNA-templated transcription
A0045892biological_processnegative regulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0006355biological_processregulation of DNA-templated transcription
B0045892biological_processnegative regulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue ILE A 301
ChainResidue
AARG61
AHOH485
AMET65
ATHR96
AVAL97
APHE98
APRO99
APRO100
AHOH440
AHOH462

site_idAC2
Number of Residues18
Detailsbinding site for residue GTP A 302
ChainResidue
AVAL22
AASP23
APHE24
ASER43
AARG44
AARG45
ALYS47
ALEU49
AGLU153
AILE154
AARG156
AGLU157
ALYS158
AGLU161
AHOH401
AHOH410
AHOH447
AHOH449

site_idAC3
Number of Residues10
Detailsbinding site for residue ILE B 301
ChainResidue
BARG61
BPRO72
BTYR75
BTHR96
BVAL97
BPHE98
BPRO100
BHOH435
BHOH442
BHOH462

site_idAC4
Number of Residues18
Detailsbinding site for residue GTP B 302
ChainResidue
ATYR181
BVAL22
BPHE24
BSER43
BARG44
BARG45
BLYS47
BLEU49
BGLU153
BGLU157
BLYS158
BHOH415
BHOH419
BHOH423
BHOH463
BHOH472
BHOH473
BHOH477

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues38
DetailsDNA_BIND: H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00621
ChainResidueDetails
AALA203-ARG222
BALA203-ARG222

site_idSWS_FT_FI2
Number of Residues22
DetailsBINDING: BINDING => ECO:0000269|PubMed:27596595, ECO:0007744|PDB:5EY0, ECO:0007744|PDB:5EY1
ChainResidueDetails
AVAL22
AGLU153
ALYS158
BVAL22
BPHE24
BSER43
BARG44
BARG45
BLYS47
BARG61
BTHR96
APHE24
BPHE98
BGLU153
BLYS158
ASER43
AARG44
AARG45
ALYS47
AARG61
ATHR96
APHE98

224572

PDB entries from 2024-09-04

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