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5EY0

Crystal structure of CodY from Staphylococcus aureus with GTP and Ile

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003700molecular_functionDNA-binding transcription factor activity
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0006355biological_processregulation of DNA-templated transcription
A0045892biological_processnegative regulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0006355biological_processregulation of DNA-templated transcription
B0045892biological_processnegative regulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue ILE B 301
ChainResidue
BARG61
BTYR75
BTHR96
BVAL97
BPHE98
BPRO100
BHOH436
BHOH444
BHOH480

site_idAC2
Number of Residues21
Detailsbinding site for residue GTP B 302
ChainResidue
BVAL22
BPHE24
BSER43
BARG44
BARG45
BLYS47
BLEU49
BGLU153
BARG156
BGLU157
BLYS158
BGLU161
BHOH408
BHOH411
BHOH412
BHOH421
BHOH435
BHOH461
BHOH470
BHOH500
BHOH539

site_idAC3
Number of Residues10
Detailsbinding site for residue ILE A 301
ChainResidue
AARG61
AMET65
ATYR75
ATHR96
AVAL97
APHE98
APRO100
AHOH436
AHOH442
AHOH495

site_idAC4
Number of Residues22
Detailsbinding site for residue GTP A 302
ChainResidue
AVAL22
APHE24
ASER43
AARG44
AARG45
ALYS47
ALEU49
AGLU153
AGLU157
ALYS158
AHOH405
AHOH409
AHOH410
AHOH423
AHOH443
AHOH463
AHOH483
AHOH487
AHOH490
AHOH508
AHOH544
BTYR181

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues38
DetailsDNA_BIND: H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00621
ChainResidueDetails
BALA203-ARG222
AALA203-ARG222

site_idSWS_FT_FI2
Number of Residues22
DetailsBINDING: BINDING => ECO:0000269|PubMed:27596595, ECO:0007744|PDB:5EY0, ECO:0007744|PDB:5EY1
ChainResidueDetails
BVAL22
BGLU153
BLYS158
AVAL22
APHE24
ASER43
AARG44
AARG45
ALYS47
AARG61
ATHR96
BPHE24
APHE98
AGLU153
ALYS158
BSER43
BARG44
BARG45
BLYS47
BARG61
BTHR96
BPHE98

222036

PDB entries from 2024-07-03

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