5ESD
Crystal Structure of M. tuberculosis MenD bound to ThDP and Mn2+
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0005886 | cellular_component | plasma membrane |
A | 0009234 | biological_process | menaquinone biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0009234 | biological_process | menaquinone biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0009234 | biological_process | menaquinone biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0030976 | molecular_function | thiamine pyrophosphate binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0005886 | cellular_component | plasma membrane |
D | 0009234 | biological_process | menaquinone biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0030976 | molecular_function | thiamine pyrophosphate binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue MN A 601 |
Chain | Residue |
A | ASP440 |
A | ASP469 |
A | GLY471 |
A | TPP602 |
A | HOH728 |
site_id | AC2 |
Number of Residues | 17 |
Details | binding site for residue TPP A 602 |
Chain | Residue |
A | GLY439 |
A | ASP440 |
A | LEU441 |
A | THR442 |
A | ASP469 |
A | GLY471 |
A | GLY473 |
A | ILE474 |
A | PHE493 |
A | MN601 |
A | HOH728 |
A | HOH732 |
D | SER29 |
A | SER377 |
A | ASN378 |
A | PRO379 |
A | ILE404 |
site_id | AC3 |
Number of Residues | 17 |
Details | binding site for residue TPP B 601 |
Chain | Residue |
B | SER377 |
B | ASN378 |
B | PRO379 |
B | GLY439 |
B | ASP440 |
B | LEU441 |
B | THR442 |
B | ASP469 |
B | GLY471 |
B | GLY472 |
B | GLY473 |
B | PHE493 |
B | MN602 |
B | HOH709 |
B | HOH715 |
C | PRO27 |
C | GLY28 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue MN B 602 |
Chain | Residue |
B | ASP440 |
B | ASP469 |
B | GLY471 |
B | TPP601 |
B | HOH709 |
site_id | AC5 |
Number of Residues | 22 |
Details | binding site for residue TPP C 601 |
Chain | Residue |
B | PRO27 |
B | GLU55 |
B | GLN118 |
C | SER377 |
C | ASN378 |
C | PRO379 |
C | ALA402 |
C | GLY403 |
C | ILE404 |
C | ASP405 |
C | GLY439 |
C | ASP440 |
C | LEU441 |
C | THR442 |
C | ASP469 |
C | GLY471 |
C | GLY472 |
C | GLY473 |
C | ILE474 |
C | PHE475 |
C | MN602 |
C | HOH728 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue MN C 602 |
Chain | Residue |
C | ASP440 |
C | ASP469 |
C | GLY471 |
C | TPP601 |
C | HOH728 |
site_id | AC7 |
Number of Residues | 22 |
Details | binding site for residue TPP D 601 |
Chain | Residue |
A | PRO27 |
A | GLU55 |
A | ALA82 |
D | SER377 |
D | ASN378 |
D | PRO379 |
D | ALA402 |
D | GLY403 |
D | ILE404 |
D | GLY439 |
D | ASP440 |
D | LEU441 |
D | THR442 |
D | ASP469 |
D | GLY471 |
D | GLY472 |
D | GLY473 |
D | ILE474 |
D | MN602 |
D | HOH704 |
D | HOH742 |
D | HOH809 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MN D 602 |
Chain | Residue |
D | ASP440 |
D | ASP469 |
D | GLY471 |
D | TPP601 |
D | HOH704 |