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5ESD

Crystal Structure of M. tuberculosis MenD bound to ThDP and Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005886cellular_componentplasma membrane
A0009234biological_processmenaquinone biosynthetic process
A0016740molecular_functiontransferase activity
A0030145molecular_functionmanganese ion binding
A0030976molecular_functionthiamine pyrophosphate binding
A0046872molecular_functionmetal ion binding
A0070204molecular_function2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
B0000287molecular_functionmagnesium ion binding
B0005886cellular_componentplasma membrane
B0009234biological_processmenaquinone biosynthetic process
B0016740molecular_functiontransferase activity
B0030145molecular_functionmanganese ion binding
B0030976molecular_functionthiamine pyrophosphate binding
B0046872molecular_functionmetal ion binding
B0070204molecular_function2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
C0000287molecular_functionmagnesium ion binding
C0005886cellular_componentplasma membrane
C0009234biological_processmenaquinone biosynthetic process
C0016740molecular_functiontransferase activity
C0030145molecular_functionmanganese ion binding
C0030976molecular_functionthiamine pyrophosphate binding
C0046872molecular_functionmetal ion binding
C0070204molecular_function2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
D0000287molecular_functionmagnesium ion binding
D0005886cellular_componentplasma membrane
D0009234biological_processmenaquinone biosynthetic process
D0016740molecular_functiontransferase activity
D0030145molecular_functionmanganese ion binding
D0030976molecular_functionthiamine pyrophosphate binding
D0046872molecular_functionmetal ion binding
D0070204molecular_function2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 601
ChainResidue
AASP440
AASP469
AGLY471
ATPP602
AHOH728

site_idAC2
Number of Residues17
Detailsbinding site for residue TPP A 602
ChainResidue
AGLY439
AASP440
ALEU441
ATHR442
AASP469
AGLY471
AGLY473
AILE474
APHE493
AMN601
AHOH728
AHOH732
DSER29
ASER377
AASN378
APRO379
AILE404

site_idAC3
Number of Residues17
Detailsbinding site for residue TPP B 601
ChainResidue
BSER377
BASN378
BPRO379
BGLY439
BASP440
BLEU441
BTHR442
BASP469
BGLY471
BGLY472
BGLY473
BPHE493
BMN602
BHOH709
BHOH715
CPRO27
CGLY28

site_idAC4
Number of Residues5
Detailsbinding site for residue MN B 602
ChainResidue
BASP440
BASP469
BGLY471
BTPP601
BHOH709

site_idAC5
Number of Residues22
Detailsbinding site for residue TPP C 601
ChainResidue
BPRO27
BGLU55
BGLN118
CSER377
CASN378
CPRO379
CALA402
CGLY403
CILE404
CASP405
CGLY439
CASP440
CLEU441
CTHR442
CASP469
CGLY471
CGLY472
CGLY473
CILE474
CPHE475
CMN602
CHOH728

site_idAC6
Number of Residues5
Detailsbinding site for residue MN C 602
ChainResidue
CASP440
CASP469
CGLY471
CTPP601
CHOH728

site_idAC7
Number of Residues22
Detailsbinding site for residue TPP D 601
ChainResidue
APRO27
AGLU55
AALA82
DSER377
DASN378
DPRO379
DALA402
DGLY403
DILE404
DGLY439
DASP440
DLEU441
DTHR442
DASP469
DGLY471
DGLY472
DGLY473
DILE474
DMN602
DHOH704
DHOH742
DHOH809

site_idAC8
Number of Residues5
Detailsbinding site for residue MN D 602
ChainResidue
DASP440
DASP469
DGLY471
DTPP601
DHOH704

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PDB entries from 2024-08-07

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