Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5EQV

1.45 Angstrom Crystal Structure of Bifunctional 2',3'-cyclic Nucleotide 2'-phosphodiesterase/3'-Nucleotidase Periplasmic Precursor Protein from Yersinia pestis with Phosphate bound to the Active site

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0009166biological_processnucleotide catabolic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue FE A 401
ChainResidue
AASP84
AASN124
AHIS233
AHIS265
AFE402
APO4405
AHOH616

site_idAC2
Number of Residues7
Detailsbinding site for residue FE A 402
ChainResidue
AASP84
AHIS267
AFE401
APO4405
AHOH616
AASP39
AHIS41

site_idAC3
Number of Residues7
Detailsbinding site for residue NA A 403
ChainResidue
AHOH617
AHOH802
AHOH893
AHOH955
AHOH1031
AHOH1114
AHOH1114

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 404
ChainResidue
ASER77
AHOH625
AHOH852
AHOH878
AHOH900
AHOH997

site_idAC5
Number of Residues14
Detailsbinding site for residue PO4 A 405
ChainResidue
AHIS41
AASP84
AASN124
AHIS125
AHIS265
AHIS267
AFE401
AFE402
AMLT406
AHOH502
AHOH524
AHOH543
AHOH616
AHOH643

site_idAC6
Number of Residues8
Detailsbinding site for residue MLT A 406
ChainResidue
AASN124
AHIS125
ATRP195
AGLU246
APO4405
AHOH502
AHOH662
AHOH731

site_idAC7
Number of Residues6
Detailsbinding site for residue PGE A 407
ChainResidue
ATHR210
ALYS214
ATYR241
AHOH590
AHOH760
AHOH760

site_idAC8
Number of Residues9
Detailsbinding site for residue TRS A 408
ChainResidue
AASN43
AASP48
ATYR50
APHE58
ASER89
AHOH538
AHOH545
AHOH634
AHOH860

Functional Information from PROSITE/UniProt
site_idPS00785
Number of Residues13
Details5_NUCLEOTIDASE_1 5'-nucleotidase signature 1. LrVLETtDlHSnM
ChainResidueDetails
ALEU32-MET44

site_idPS00786
Number of Residues12
Details5_NUCLEOTIDASE_2 5'-nucleotidase signature 2. YavgnIGNHEFN
ChainResidueDetails
ATYR117-ASN128

238268

PDB entries from 2025-07-02

PDB statisticsPDBj update infoContact PDBjnumon