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5EMF

Crystal structure of RNA r(GCUGCUGC) with antisense PNA p(GCAGCAGC)

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CL A 101
ChainResidue
AC2
AHOH206
AHOH260
BGPN101
BHOH313
BHOH316

site_idAC2
Number of Residues1
Detailsbinding site for residue CL B 201
ChainResidue
BGPN107

site_idAC3
Number of Residues18
Detailsbinding site for residues GPN B 101 and CPN B 102
ChainResidue
AG7
AC8
AC8
ACL101
AHOH234
BAPN103
BGPN107
BCPN108
BHOH308
BHOH317
BHOH321
BHOH325
BHOH326
BHOH327
BHOH328
BHOH332
AG1
AC2

site_idAC4
Number of Residues15
Detailsbinding site for residues CPN B 102 and APN B 103
ChainResidue
AG1
AU6
AG7
AC8
AHOH234
BGPN101
BGPN104
BCPN108
BHOH308
BHOH310
BHOH319
BHOH320
BHOH324
BHOH328
BHOH332

site_idAC5
Number of Residues17
Detailsbinding site for residues APN B 103 and GPN B 104
ChainResidue
AG1
AG4
AC5
AC5
AU6
AG7
BCPN102
BCPN105
BCPN108
BHOH302
BHOH303
BHOH306
BHOH307
BHOH310
BHOH319
BHOH320
BHOH324

site_idAC6
Number of Residues16
Detailsbinding site for residues GPN B 104 and CPN B 105
ChainResidue
AG4
AG4
AC5
AC5
AU6
BAPN103
BAPN106
BHOH301
BHOH302
BHOH303
BHOH304
BHOH306
BHOH307
BHOH320
BHOH329
BHOH330

site_idAC7
Number of Residues13
Detailsbinding site for residues CPN B 105 and APN B 106
ChainResidue
AU3
AG4
AC5
AC5
BGPN104
BGPN107
BHOH301
BHOH304
BHOH312
BHOH315
BHOH318
BHOH329
BHOH330

site_idAC8
Number of Residues18
Detailsbinding site for residues APN B 106 and GPN B 107
ChainResidue
BHOH314
BHOH315
BHOH318
BHOH323
BHOH329
AC2
AU3
AG4
AG7
AC8
BGPN101
BCPN105
BCPN108
BCL201
BHOH305
BHOH309
BHOH311
BHOH312

site_idAC9
Number of Residues21
Detailsbinding site for residues GPN B 107 and CPN B 108
ChainResidue
AG1
AC2
AU3
AG7
AC8
BGPN101
BCPN102
BAPN103
BAPN106
BCL201
BHOH305
BHOH309
BHOH311
BHOH313
BHOH314
BHOH315
BHOH316
BHOH322
BHOH323
BHOH331
BHOH339

246031

PDB entries from 2025-12-10

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