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5EMC

Transcription factor GRDBD and smGRE complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
A0008270molecular_functionzinc ion binding
A0043565molecular_functionsequence-specific DNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0006355biological_processregulation of DNA-templated transcription
B0008270molecular_functionzinc ion binding
B0043565molecular_functionsequence-specific DNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 601
ChainResidue
ACYS440
ACYS443
ACYS457
ACYS460

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 602
ChainResidue
ACYS476
ACYS482
ACYS492
ACYS495

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 601
ChainResidue
BCYS443
BCYS457
BCYS460
BCYS440

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 602
ChainResidue
BCYS476
BCYS482
BCYS492
BCYS495

site_idAC5
Number of Residues11
Detailsbinding site for Di-nucleotide DA D 32 and 5CM D 33
ChainResidue
BARG466
CDG13
CDT14
CDT15
CHOH109
CHOH116
DDA31
DDA34
DHOH106
DHOH109
DHOH110

site_idAC6
Number of Residues9
Detailsbinding site for Di-nucleotide 5CM D 33 and DA D 34
ChainResidue
CDA11
CDT12
CDG13
CHOH109
DDA32
DDT35
DHOH103
DHOH106
DHOH109

site_idAC7
Number of Residues9
Detailsbinding site for Di-nucleotide DT D 41 and 5CM D 42
ChainResidue
CDA3
CDG4
CDA5
CDA6
DDT40
DDT43
DHOH104
DHOH111
DHOH114

site_idAC8
Number of Residues11
Detailsbinding site for Di-nucleotide 5CM D 42 and DT D 43
ChainResidue
CDC2
CDA3
CDG4
CDA5
DDC27
DDT41
DDG44
DHOH104
DHOH107
DHOH111
DHOH114

Functional Information from PROSITE/UniProt
site_idPS00031
Number of Residues27
DetailsNUCLEAR_REC_DBD_1 Nuclear hormones receptors DNA-binding region signature. ClvCs.Deasgc.HYgvltCgsCkvFFkR
ChainResidueDetails
ACYS440-ARG466

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues78
DetailsZinc finger: {"description":"NR C4-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00407","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19141540","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P06537","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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