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5EFK

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (Y745F mutant) in complex with alpha tubulin K40 tripeptide substrate

Functional Information from GO Data
ChainGOidnamespacecontents
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN B 2001
ChainResidue
BASP612
BHIS614
BASP705
BHOH2114

site_idAC2
Number of Residues5
Detailsbinding site for residue K B 2002
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K B 2003
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH2117
BHOH2213

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL B 2004
ChainResidue
BARG660
BTYR662
BPHE793

site_idAC5
Number of Residues7
Detailsbinding site for residue PEG B 2005
ChainResidue
BGLN597
BSER598
BTHR600
BARG636
BGLY671
BLYS672
BGLY714

site_idAC6
Number of Residues4
Detailsbinding site for residue NO3 B 2006
ChainResidue
BTRP459
BTRP459
BPRO519
BPRO519

site_idAC7
Number of Residues3
Detailsbinding site for residue EDO B 2007
ChainResidue
BHIS727
BMET730
BSER731

site_idAC8
Number of Residues8
Detailsbinding site for residue MCM A 101
ChainResidue
AASP3
AHOH201
AHOH204
BPRO464
BARG601
BSER603
BLEU712
BHOH2354

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PDB entries from 2025-12-17

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