Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5EF7

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HPOB

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
A5OJ804
AHOH921

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
ALEU634
AASP610
AASP612
AHIS614
ASER633

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH923
AHOH987

site_idAC4
Number of Residues18
Detailsbinding site for residue 5OJ A 804
ChainResidue
ASER531
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ALEU712
AGLY743
ATYR745
AZN801
AHOH921
AHOH999
BTHR777
BTHR780
BASN784
BHOH918

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
B5OJ804
BHOH905

site_idAC6
Number of Residues6
Detailsbinding site for residue K B 802
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH923
BHOH958

site_idAC7
Number of Residues5
Detailsbinding site for residue K B 803
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC8
Number of Residues18
Detailsbinding site for residue 5OJ B 804
ChainResidue
ATHR777
ATHR780
AASN784
BSER531
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BLEU712
BGLY743
BTYR745
BZN801
BHOH901
BHOH905
BHOH962

239492

PDB entries from 2025-07-30

PDB statisticsPDBj update infoContact PDBjnumon