5EF7
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HPOB
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-E |
| Synchrotron site | APS |
| Beamline | 24-ID-E |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2015-08-15 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.97918 |
| Spacegroup name | P 1 |
| Unit cell lengths | 48.672, 56.637, 74.784 |
| Unit cell angles | 106.45, 90.11, 97.09 |
Refinement procedure
| Resolution | 50.545 - 1.900 |
| R-factor | 0.1825 |
| Rwork | 0.181 |
| R-free | 0.22060 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5eek |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.086 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.8.3_1479) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.600 | 2.050 |
| High resolution limit [Å] | 1.900 | 1.900 |
| Rmerge | 0.143 | 0.754 |
| Number of reflections | 58401 | |
| <I/σ(I)> | 6.9 | 1.6 |
| Completeness [%] | 97.5 | 95.7 |
| Redundancy | 3.2 | 3.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 0.1 M Tris, pH 8.5, 25% PEG3350 |
