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5E9R

X-ray structure of the complex between lysozyme and the compound fac, cis-[RuII(CO)3Cl2(N3-MBI), MBI=N-methyl-benzimidazole

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0008152biological_processmetabolic process
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue 5LN A 201
ChainResidue
AALA11
AARG14
AHIS15
AASP87
AILE88
ATHR89
ACMO202

site_idAC2
Number of Residues4
Detailsbinding site for residue CMO A 202
ChainResidue
A5LN201
AHOH406
ALYS1
AGLU7

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 203
ChainResidue
ASER60
ACYS64
ASER72
AARG73
AHOH319
AHOH367

site_idAC4
Number of Residues5
Detailsbinding site for residue CL A 204
ChainResidue
AASN65
AGLY67
AARG68
ATHR69
AHOH422

site_idAC5
Number of Residues2
Detailsbinding site for residue CL A 205
ChainResidue
ATYR23
AASN113

site_idAC6
Number of Residues4
Detailsbinding site for residue CL A 206
ChainResidue
AVAL2
AASN65
AGLY67
AHOH321

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

218500

PDB entries from 2024-04-17

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