5DY9

Y68T Hfq from Methanococcus jannaschii in complex with AMP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0006355	biological_process	regulation of DNA-templated transcription
B	0003723	molecular_function	RNA binding
B	0006355	biological_process	regulation of DNA-templated transcription
C	0003723	molecular_function	RNA binding
C	0006355	biological_process	regulation of DNA-templated transcription
D	0003723	molecular_function	RNA binding
D	0006355	biological_process	regulation of DNA-templated transcription
E	0003723	molecular_function	RNA binding
E	0006355	biological_process	regulation of DNA-templated transcription
F	0003723	molecular_function	RNA binding
F	0006355	biological_process	regulation of DNA-templated transcription
G	0003723	molecular_function	RNA binding
G	0006355	biological_process	regulation of DNA-templated transcription
H	0003723	molecular_function	RNA binding
H	0006355	biological_process	regulation of DNA-templated transcription
I	0003723	molecular_function	RNA binding
I	0006355	biological_process	regulation of DNA-templated transcription
J	0003723	molecular_function	RNA binding
J	0006355	biological_process	regulation of DNA-templated transcription
K	0003723	molecular_function	RNA binding
K	0006355	biological_process	regulation of DNA-templated transcription
L	0003723	molecular_function	RNA binding
L	0006355	biological_process	regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	binding site for residue AMP A 101

Chain	Residue
A	ASN16
E	HOH213
E	HOH220
F	ILE14
F	TYR48
F	PHE62
F	HIS64
F	HOH235
A	GLU18
A	ASN47
A	TYR48
A	HOH201
A	HOH207
A	HOH210
A	HOH233
E	AMP101

---

site_id	AC2
Number of Residues	4
Details	binding site for residue GOL B 101

Chain	Residue
B	ILE14
B	PHE17
B	ARG22
B	HOH202

---

site_id	AC3
Number of Residues	7
Details	binding site for residue GOL B 102

Chain	Residue
A	HOH233
B	TYR48
B	HIS64
B	HOH220
B	HOH246
C	LYS63
C	HIS64

---

site_id	AC4
Number of Residues	6
Details	binding site for residue SO4 C 101

Chain	Residue
C	TYR48
C	PHE62
C	HIS64
C	HOH201
C	HOH224
C	HOH246

---

site_id	AC5
Number of Residues	6
Details	binding site for residue GOL D 101

Chain	Residue
C	GLU36
C	HOH230
D	PHE31
D	THR68
D	HOH206
D	HOH220

---

site_id	AC6
Number of Residues	16
Details	binding site for residue AMP E 101

Chain	Residue
A	AMP101
D	TYR48
D	PHE62
D	HIS64
E	GLU18
E	ASN47
E	TYR48
E	LYS63
E	HOH201
E	HOH202
E	HOH204
E	HOH213
E	HOH219
E	HOH220
E	HOH226
E	HOH244

---

site_id	AC7
Number of Residues	8
Details	binding site for residue TRS E 102

Chain	Residue
D	LEU32
D	ASN34
D	GLU36
E	PHE31
E	ASP67
E	THR68
E	HOH205
E	HOH217

---

site_id	AC8
Number of Residues	6
Details	binding site for residue SO4 E 103

Chain	Residue
E	LYS12
E	VAL13
E	HOH206
E	HOH208
I	LYS26
I	TYR71

---

site_id	AC9
Number of Residues	3
Details	binding site for residue CL E 104

Chain	Residue
E	ARG21
E	ASN24
I	HOH275

---

site_id	AD1
Number of Residues	7
Details	binding site for residue SO4 F 101

Chain	Residue
F	ARG21
F	ARG22
F	HOH203
F	HOH229
I	PEG101
J	TYR19
J	ARG22

---

site_id	AD2
Number of Residues	6
Details	binding site for residue NA F 102

Chain	Residue
E	LYS12
E	HOH273
F	ASN16
F	HOH214
F	HOH258
I	ARG22

---

site_id	AD3
Number of Residues	14
Details	binding site for residue AMP G 101

Chain	Residue
G	GLU18
G	ASN47
G	TYR48
G	LYS63
G	HOH202
G	HOH206
G	HOH210
G	HOH215
G	HOH219
G	HOH224
L	TYR48
L	PHE62
L	HIS64
L	HOH231

---

site_id	AD4
Number of Residues	10
Details	binding site for residue PEG G 102

Chain	Residue
G	ASN34
G	ARG57
G	LEU59
G	HOH201
G	HOH213
G	HOH218
G	HOH249
H	PHE31
H	ASP67
H	THR68

---

site_id	AD5
Number of Residues	7
Details	binding site for residue PEG H 101

Chain	Residue
H	ARG21
H	VAL45
H	SER46
H	HOH204
I	PHE17
I	HOH202
I	HOH234

---

site_id	AD6
Number of Residues	4
Details	binding site for residue CL H 102

Chain	Residue
H	ARG57
H	HOH203
I	PHE31
I	THR68

---

site_id	AD7
Number of Residues	7
Details	binding site for residue PEG I 101

Chain	Residue
F	ARG21
F	SO4101
I	THR43
I	HOH201
I	HOH238
J	ARG22
J	TYR71

---

site_id	AD8
Number of Residues	3
Details	binding site for residue CL I 102

Chain	Residue
E	ARG21
I	ARG21
I	ARG22

---

site_id	AD9
Number of Residues	6
Details	binding site for residue TRS J 101

Chain	Residue
I	LEU32
I	GLU36
I	LEU38
I	ARG57
J	PHE31
J	THR68

---

site_id	AE1
Number of Residues	4
Details	binding site for residue SO4 J 102

Chain	Residue
F	HOH210
J	ARG22
J	HOH207
J	HOH227

---

site_id	AE2
Number of Residues	1
Details	binding site for residue CL K 101

Chain	Residue
K	ARG22

---

site_id	AE3
Number of Residues	1
Details	binding site for residue CL K 102

Chain	Residue
J	HOH238

---

site_id	AE4
Number of Residues	3
Details	binding site for residue NA K 103

Chain	Residue
K	TYR48
K	HOH214
K	HOH268

---

site_id	AE5
Number of Residues	7
Details	binding site for residue TRS L 101

Chain	Residue
G	PHE31
G	THR68
L	LEU32
L	GLU36
L	LEU38
L	ARG57
L	HOH204

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	504
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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