5DY9
Y68T Hfq from Methanococcus jannaschii in complex with AMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0003723 | molecular_function | RNA binding |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0003723 | molecular_function | RNA binding |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0003723 | molecular_function | RNA binding |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0003723 | molecular_function | RNA binding |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| F | 0003723 | molecular_function | RNA binding |
| F | 0006355 | biological_process | regulation of DNA-templated transcription |
| G | 0003723 | molecular_function | RNA binding |
| G | 0006355 | biological_process | regulation of DNA-templated transcription |
| H | 0003723 | molecular_function | RNA binding |
| H | 0006355 | biological_process | regulation of DNA-templated transcription |
| I | 0003723 | molecular_function | RNA binding |
| I | 0006355 | biological_process | regulation of DNA-templated transcription |
| J | 0003723 | molecular_function | RNA binding |
| J | 0006355 | biological_process | regulation of DNA-templated transcription |
| K | 0003723 | molecular_function | RNA binding |
| K | 0006355 | biological_process | regulation of DNA-templated transcription |
| L | 0003723 | molecular_function | RNA binding |
| L | 0006355 | biological_process | regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 16 |
| Details | binding site for residue AMP A 101 |
| Chain | Residue |
| A | ASN16 |
| E | HOH213 |
| E | HOH220 |
| F | ILE14 |
| F | TYR48 |
| F | PHE62 |
| F | HIS64 |
| F | HOH235 |
| A | GLU18 |
| A | ASN47 |
| A | TYR48 |
| A | HOH201 |
| A | HOH207 |
| A | HOH210 |
| A | HOH233 |
| E | AMP101 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue GOL B 101 |
| Chain | Residue |
| B | ILE14 |
| B | PHE17 |
| B | ARG22 |
| B | HOH202 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 102 |
| Chain | Residue |
| A | HOH233 |
| B | TYR48 |
| B | HIS64 |
| B | HOH220 |
| B | HOH246 |
| C | LYS63 |
| C | HIS64 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 C 101 |
| Chain | Residue |
| C | TYR48 |
| C | PHE62 |
| C | HIS64 |
| C | HOH201 |
| C | HOH224 |
| C | HOH246 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue GOL D 101 |
| Chain | Residue |
| C | GLU36 |
| C | HOH230 |
| D | PHE31 |
| D | THR68 |
| D | HOH206 |
| D | HOH220 |
| site_id | AC6 |
| Number of Residues | 16 |
| Details | binding site for residue AMP E 101 |
| Chain | Residue |
| A | AMP101 |
| D | TYR48 |
| D | PHE62 |
| D | HIS64 |
| E | GLU18 |
| E | ASN47 |
| E | TYR48 |
| E | LYS63 |
| E | HOH201 |
| E | HOH202 |
| E | HOH204 |
| E | HOH213 |
| E | HOH219 |
| E | HOH220 |
| E | HOH226 |
| E | HOH244 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue TRS E 102 |
| Chain | Residue |
| D | LEU32 |
| D | ASN34 |
| D | GLU36 |
| E | PHE31 |
| E | ASP67 |
| E | THR68 |
| E | HOH205 |
| E | HOH217 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 E 103 |
| Chain | Residue |
| E | LYS12 |
| E | VAL13 |
| E | HOH206 |
| E | HOH208 |
| I | LYS26 |
| I | TYR71 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue CL E 104 |
| Chain | Residue |
| E | ARG21 |
| E | ASN24 |
| I | HOH275 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 F 101 |
| Chain | Residue |
| F | ARG21 |
| F | ARG22 |
| F | HOH203 |
| F | HOH229 |
| I | PEG101 |
| J | TYR19 |
| J | ARG22 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue NA F 102 |
| Chain | Residue |
| E | LYS12 |
| E | HOH273 |
| F | ASN16 |
| F | HOH214 |
| F | HOH258 |
| I | ARG22 |
| site_id | AD3 |
| Number of Residues | 14 |
| Details | binding site for residue AMP G 101 |
| Chain | Residue |
| G | GLU18 |
| G | ASN47 |
| G | TYR48 |
| G | LYS63 |
| G | HOH202 |
| G | HOH206 |
| G | HOH210 |
| G | HOH215 |
| G | HOH219 |
| G | HOH224 |
| L | TYR48 |
| L | PHE62 |
| L | HIS64 |
| L | HOH231 |
| site_id | AD4 |
| Number of Residues | 10 |
| Details | binding site for residue PEG G 102 |
| Chain | Residue |
| G | ASN34 |
| G | ARG57 |
| G | LEU59 |
| G | HOH201 |
| G | HOH213 |
| G | HOH218 |
| G | HOH249 |
| H | PHE31 |
| H | ASP67 |
| H | THR68 |
| site_id | AD5 |
| Number of Residues | 7 |
| Details | binding site for residue PEG H 101 |
| Chain | Residue |
| H | ARG21 |
| H | VAL45 |
| H | SER46 |
| H | HOH204 |
| I | PHE17 |
| I | HOH202 |
| I | HOH234 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue CL H 102 |
| Chain | Residue |
| H | ARG57 |
| H | HOH203 |
| I | PHE31 |
| I | THR68 |
| site_id | AD7 |
| Number of Residues | 7 |
| Details | binding site for residue PEG I 101 |
| Chain | Residue |
| F | ARG21 |
| F | SO4101 |
| I | THR43 |
| I | HOH201 |
| I | HOH238 |
| J | ARG22 |
| J | TYR71 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue CL I 102 |
| Chain | Residue |
| E | ARG21 |
| I | ARG21 |
| I | ARG22 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue TRS J 101 |
| Chain | Residue |
| I | LEU32 |
| I | GLU36 |
| I | LEU38 |
| I | ARG57 |
| J | PHE31 |
| J | THR68 |
| site_id | AE1 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 J 102 |
| Chain | Residue |
| F | HOH210 |
| J | ARG22 |
| J | HOH207 |
| J | HOH227 |
| site_id | AE2 |
| Number of Residues | 1 |
| Details | binding site for residue CL K 101 |
| Chain | Residue |
| K | ARG22 |
| site_id | AE3 |
| Number of Residues | 1 |
| Details | binding site for residue CL K 102 |
| Chain | Residue |
| J | HOH238 |
| site_id | AE4 |
| Number of Residues | 3 |
| Details | binding site for residue NA K 103 |
| Chain | Residue |
| K | TYR48 |
| K | HOH214 |
| K | HOH268 |
| site_id | AE5 |
| Number of Residues | 7 |
| Details | binding site for residue TRS L 101 |
| Chain | Residue |
| G | PHE31 |
| G | THR68 |
| L | LEU32 |
| L | GLU36 |
| L | LEU38 |
| L | ARG57 |
| L | HOH204 |
