Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DY5

Crystal structure of human Sirt2 in complex with a SirReal probe fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0017136molecular_functionhistone deacetylase activity, NAD-dependent
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS195
ACYS200
ACYS221
ACYS224

site_idAC2
Number of Residues15
Detailsbinding site for residue 5GR A 402
ChainResidue
ATYR139
APRO140
AILE169
AHIS187
APHE190
AILE232
AVAL233
APHE235
ABU3405
AHOH605
APHE96
AARG97
APHE119
APHE131
AALA135

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 403
ChainResidue
ATHR63
ALEU64
AGLU65
AALA319
AHOH508

site_idAC4
Number of Residues10
Detailsbinding site for residue EPE A 404
ChainResidue
AGLU61
ATHR63
AGLU65
AARG69
AARG78
ALEU252
ALYS253
AVAL254
AASP255
AHOH538

site_idAC5
Number of Residues9
Detailsbinding site for residue BU3 A 405
ChainResidue
AALA85
AASP95
APHE96
AARG97
AGLN167
AASN168
AILE169
A5GR402
AHOH505

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00236","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues13
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25672491","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4RMG","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00236","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11427894","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23454361","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24389023","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25672491","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25704306","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4R8M","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q5RJQ4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon