5DWZ
Structural and functional characterization of PqsBC, a condensing enzyme in the biosynthesis of the Pseudomonas aeruginosa quinolone signal
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0016746 | molecular_function | acyltransferase activity |
A | 0044550 | biological_process | secondary metabolite biosynthetic process |
B | 0005737 | cellular_component | cytoplasm |
B | 0016746 | molecular_function | acyltransferase activity |
B | 0044550 | biological_process | secondary metabolite biosynthetic process |
C | 0004315 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] synthase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006633 | biological_process | fatty acid biosynthetic process |
C | 0016746 | molecular_function | acyltransferase activity |
C | 0044550 | biological_process | secondary metabolite biosynthetic process |
D | 0004315 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] synthase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006633 | biological_process | fatty acid biosynthetic process |
D | 0016746 | molecular_function | acyltransferase activity |
D | 0044550 | biological_process | secondary metabolite biosynthetic process |
E | 0005737 | cellular_component | cytoplasm |
E | 0016746 | molecular_function | acyltransferase activity |
E | 0044550 | biological_process | secondary metabolite biosynthetic process |
F | 0004315 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] synthase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006633 | biological_process | fatty acid biosynthetic process |
F | 0016746 | molecular_function | acyltransferase activity |
F | 0044550 | biological_process | secondary metabolite biosynthetic process |
G | 0005737 | cellular_component | cytoplasm |
G | 0016746 | molecular_function | acyltransferase activity |
G | 0044550 | biological_process | secondary metabolite biosynthetic process |
H | 0004315 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] synthase activity |
H | 0005737 | cellular_component | cytoplasm |
H | 0006633 | biological_process | fatty acid biosynthetic process |
H | 0016746 | molecular_function | acyltransferase activity |
H | 0044550 | biological_process | secondary metabolite biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue PO4 C 401 |
Chain | Residue |
C | ALA129 |
C | PHE173 |
C | HIS269 |
C | ILE301 |
C | HOH522 |
C | HOH599 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue PO4 C 402 |
Chain | Residue |
F | LYS236 |
C | SER167 |
C | ARG168 |
F | GLY233 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue PO4 C 403 |
Chain | Residue |
C | PHE203 |
C | LYS236 |
C | MET237 |
C | PHE240 |
C | VAL241 |
F | ARG168 |
site_id | AC4 |
Number of Residues | 9 |
Details | binding site for residue GOL C 404 |
Chain | Residue |
B | ARG92 |
B | GLY215 |
B | PRO218 |
B | HOH660 |
C | HIS198 |
C | ALA238 |
C | SER239 |
C | ARG251 |
C | HOH549 |
site_id | AC5 |
Number of Residues | 7 |
Details | binding site for residue GOL C 405 |
Chain | Residue |
B | GLN85 |
B | GLY89 |
B | ALA90 |
C | ASP200 |
C | ALA201 |
C | THR202 |
C | HOH555 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue MPO C 406 |
Chain | Residue |
C | PHE38 |
C | PHE274 |
F | SER34 |
F | TRP35 |
site_id | AC7 |
Number of Residues | 9 |
Details | binding site for residue MPO C 407 |
Chain | Residue |
C | MET237 |
C | VAL241 |
C | PRO242 |
C | THR243 |
C | ASN244 |
C | VAL245 |
C | TRP279 |
C | TRP333 |
C | PHE335 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue TRS C 408 |
Chain | Residue |
C | ASP30 |
C | LEU31 |
C | SER32 |
C | ARG168 |
F | VAL241 |
F | PRO242 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue CL C 409 |
Chain | Residue |
B | ARG162 |
B | HOH612 |
C | ASN109 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue GOL B 501 |
Chain | Residue |
B | MET1 |
B | THR155 |
B | LYS157 |
B | ALA158 |
B | GLU257 |
B | THR274 |
B | LEU275 |
B | GLU276 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue GOL B 502 |
Chain | Residue |
B | ASP57 |
B | ARG92 |
B | TYR119 |
B | ARG212 |
B | HOH644 |
C | GLU197 |
C | HIS198 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue GOL B 503 |
Chain | Residue |
B | ARG207 |
B | PHE210 |
B | TRP222 |
B | HOH634 |
C | GLU254 |
site_id | AD4 |
Number of Residues | 9 |
Details | binding site for residue GOL B 504 |
Chain | Residue |
B | PRO203 |
B | VAL206 |
B | ARG207 |
B | GLU225 |
B | GLU226 |
B | TRP227 |
B | PHE228 |
B | HOH603 |
B | HOH651 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue PGE B 505 |
Chain | Residue |
B | ASN9 |
B | LEU10 |
B | GLN36 |
B | ARG37 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue PO4 D 401 |
Chain | Residue |
D | PHE203 |
D | LYS236 |
D | MET237 |
D | PHE240 |
D | VAL241 |
H | ARG168 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue PO4 D 402 |
Chain | Residue |
D | ALA129 |
D | PHE173 |
D | HIS269 |
D | VAL299 |
D | ILE301 |
D | HOH525 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue PO4 D 403 |
Chain | Residue |
D | SER167 |
D | ARG168 |
D | THR169 |
H | LYS236 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue PO4 D 404 |
Chain | Residue |
D | VAL241 |
D | PRO242 |
D | THR243 |
D | ASN244 |
D | VAL245 |
D | TRP279 |
D | PHE335 |
site_id | AE1 |
Number of Residues | 7 |
Details | binding site for residue GOL D 405 |
Chain | Residue |
A | GLN85 |
A | GLY89 |
A | ASN91 |
D | ASP200 |
D | ALA201 |
D | THR202 |
D | HOH554 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue MPO D 406 |
Chain | Residue |
D | LEU31 |
D | SER32 |
D | HOH545 |
H | PRO242 |
H | PHE274 |
site_id | AE3 |
Number of Residues | 2 |
Details | binding site for residue PEG D 407 |
Chain | Residue |
D | PHE274 |
H | SER34 |
site_id | AE4 |
Number of Residues | 2 |
Details | binding site for residue PEG D 408 |
Chain | Residue |
D | TYR18 |
D | PHE165 |
site_id | AE5 |
Number of Residues | 2 |
Details | binding site for residue CL D 409 |
Chain | Residue |
D | ASN109 |
D | LYS113 |
site_id | AE6 |
Number of Residues | 7 |
Details | binding site for residue PO4 A 401 |
Chain | Residue |
A | MET1 |
A | LYS157 |
A | ALA158 |
A | GLU257 |
A | THR274 |
A | LEU275 |
A | GLU276 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue PO4 F 401 |
Chain | Residue |
C | PRO242 |
F | SER32 |
F | TRP35 |
F | HOH515 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue PO4 F 402 |
Chain | Residue |
C | ARG168 |
F | PHE203 |
F | LYS236 |
F | MET237 |
F | PHE240 |
F | VAL241 |
site_id | AE9 |
Number of Residues | 7 |
Details | binding site for residue PO4 F 403 |
Chain | Residue |
F | VAL241 |
F | PRO242 |
F | THR243 |
F | ASN244 |
F | VAL245 |
F | TRP279 |
F | PHE335 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue PO4 F 404 |
Chain | Residue |
F | ALA129 |
F | PHE173 |
F | HIS269 |
F | ILE301 |
F | HOH513 |
site_id | AF2 |
Number of Residues | 5 |
Details | binding site for residue PO4 F 405 |
Chain | Residue |
F | LEU163 |
F | ASP164 |
F | THR169 |
F | SER170 |
F | LEU225 |
site_id | AF3 |
Number of Residues | 5 |
Details | binding site for residue PO4 F 406 |
Chain | Residue |
C | LYS236 |
F | SER167 |
F | ARG168 |
F | THR169 |
F | HOH512 |
site_id | AF4 |
Number of Residues | 7 |
Details | binding site for residue PO4 E 401 |
Chain | Residue |
E | MET1 |
E | LYS157 |
E | ALA158 |
E | GLU257 |
E | THR274 |
E | LEU275 |
E | GLU276 |
site_id | AF5 |
Number of Residues | 6 |
Details | binding site for residue NA E 402 |
Chain | Residue |
E | LEU165 |
E | GLY166 |
E | HOH535 |
E | HOH556 |
E | HOH628 |
H | HOH524 |
site_id | AF6 |
Number of Residues | 4 |
Details | binding site for residue PO4 H 401 |
Chain | Residue |
D | PRO242 |
H | LEU31 |
H | SER32 |
H | TRP35 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue PO4 H 402 |
Chain | Residue |
D | ARG168 |
H | PHE203 |
H | LYS236 |
H | MET237 |
H | PHE240 |
H | VAL241 |
site_id | AF8 |
Number of Residues | 7 |
Details | binding site for residue PO4 H 403 |
Chain | Residue |
H | ALA129 |
H | PHE173 |
H | HIS269 |
H | VAL299 |
H | ILE301 |
H | HOH532 |
H | HOH558 |
site_id | AF9 |
Number of Residues | 5 |
Details | binding site for residue PO4 H 404 |
Chain | Residue |
H | LEU163 |
H | ASP164 |
H | THR169 |
H | SER170 |
H | HOH502 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue PO4 H 405 |
Chain | Residue |
D | LYS236 |
H | SER167 |
H | ARG168 |
H | THR169 |
H | HOH575 |
site_id | AG2 |
Number of Residues | 8 |
Details | binding site for residue MPO H 406 |
Chain | Residue |
H | VAL241 |
H | PRO242 |
H | THR243 |
H | ASN244 |
H | VAL245 |
H | TRP279 |
H | TRP333 |
H | PHE335 |
site_id | AG3 |
Number of Residues | 7 |
Details | binding site for residue PEG H 407 |
Chain | Residue |
H | ASN20 |
H | VAL28 |
H | PRO29 |
H | LEU31 |
H | TRP36 |
H | HOH510 |
H | HOH602 |
Functional Information from PROSITE/UniProt
site_id | PS00430 |
Number of Residues | 65 |
Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. saghkvklaaitcelparsyenddpvfaavpdlseswwqfwgvnrrgyfdprngene..........................................................FSLVVRAA |
Chain | Residue | Details |
C | SER-1-ALA63 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Acyl-thioester intermediate => ECO:0000305|PubMed:24239007, ECO:0000305|PubMed:26811339 |
Chain | Residue | Details |
C | ALA129 | |
D | ALA129 | |
F | ALA129 | |
H | ALA129 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: ACT_SITE => ECO:0000305|PubMed:26811339 |
Chain | Residue | Details |
C | HIS269 | |
D | HIS269 | |
F | HIS269 | |
H | HIS269 |