5DI0
Crystal structure of Dln1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005537 | molecular_function | D-mannose binding |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0030246 | molecular_function | carbohydrate binding |
| A | 0042742 | biological_process | defense response to bacterium |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046930 | cellular_component | pore complex |
| A | 0048030 | molecular_function | disaccharide binding |
| B | 0005537 | molecular_function | D-mannose binding |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0030246 | molecular_function | carbohydrate binding |
| B | 0042742 | biological_process | defense response to bacterium |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046930 | cellular_component | pore complex |
| B | 0048030 | molecular_function | disaccharide binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue EDO A 401 |
| Chain | Residue |
| A | VAL36 |
| B | HOH511 |
| A | THR106 |
| A | HOH522 |
| A | HOH563 |
| A | HOH744 |
| A | HOH755 |
| A | HOH762 |
| B | GLU100 |
| B | PG4416 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 402 |
| Chain | Residue |
| A | LEU7 |
| A | PEG408 |
| A | HOH511 |
| A | HOH547 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 403 |
| Chain | Residue |
| A | ILE10 |
| A | GLY11 |
| A | TYR114 |
| A | EDO404 |
| A | CL418 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 404 |
| Chain | Residue |
| A | ILE9 |
| A | GLY11 |
| A | GLY12 |
| A | EDO403 |
| A | EDO405 |
| A | PEG408 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 405 |
| Chain | Residue |
| A | GLY11 |
| A | GLN13 |
| A | GLY85 |
| A | EDO404 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | binding site for residue PEG A 406 |
| Chain | Residue |
| A | SER16 |
| A | PHE18 |
| A | PHE56 |
| A | GLY57 |
| A | GLY130 |
| A | HOH501 |
| A | HOH504 |
| A | HOH508 |
| A | HOH576 |
| A | HOH720 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue PEG A 407 |
| Chain | Residue |
| A | GLY38 |
| A | TRP39 |
| A | SER107 |
| A | HOH506 |
| A | HOH554 |
| B | GLY109 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue PEG A 408 |
| Chain | Residue |
| A | SER17 |
| A | VAL127 |
| A | GLY128 |
| A | ARG129 |
| A | EDO402 |
| A | EDO404 |
| site_id | AC9 |
| Number of Residues | 9 |
| Details | binding site for residue PEG A 409 |
| Chain | Residue |
| A | ASN24 |
| A | ASN25 |
| A | ASP50 |
| A | ARG52 |
| A | HOH503 |
| A | HOH654 |
| A | HOH688 |
| A | HOH734 |
| B | THR157 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue PEG A 410 |
| Chain | Residue |
| A | ASN25 |
| A | GLY26 |
| A | SER49 |
| A | THR202 |
| A | PHE205 |
| A | HOH524 |
| site_id | AD2 |
| Number of Residues | 9 |
| Details | binding site for residue PEG A 411 |
| Chain | Residue |
| A | THR167 |
| A | GLU222 |
| A | THR266 |
| A | ILE267 |
| A | GLY268 |
| A | LYS307 |
| A | ASN309 |
| A | HOH517 |
| A | HOH569 |
| site_id | AD3 |
| Number of Residues | 8 |
| Details | binding site for residue PGE A 412 |
| Chain | Residue |
| A | THR5 |
| A | ASN6 |
| A | LEU7 |
| A | GLU8 |
| A | HOH547 |
| A | HOH606 |
| A | HOH727 |
| A | HOH779 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue PGE A 413 |
| Chain | Residue |
| A | ARG87 |
| A | GLY131 |
| A | SER132 |
| A | ASP133 |
| A | ASP135 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue PGE A 414 |
| Chain | Residue |
| A | GLY71 |
| A | ASN96 |
| A | LYS97 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue PGE A 415 |
| Chain | Residue |
| A | HIS104 |
| A | MET105 |
| A | SER107 |
| A | TRP108 |
| A | HOH545 |
| A | HOH678 |
| site_id | AD7 |
| Number of Residues | 7 |
| Details | binding site for residue PG4 A 416 |
| Chain | Residue |
| A | LYS94 |
| A | GLU100 |
| A | PHE102 |
| A | GLU113 |
| A | HOH534 |
| A | TRP80 |
| A | LYS92 |
| site_id | AD8 |
| Number of Residues | 6 |
| Details | binding site for residue PG4 A 417 |
| Chain | Residue |
| A | GLU30 |
| A | LYS31 |
| A | TRP47 |
| A | VAL67 |
| A | HOH681 |
| B | EDO407 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue CL A 418 |
| Chain | Residue |
| A | GLY81 |
| A | GLY83 |
| A | GLY85 |
| A | EDO403 |
| A | HOH739 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue EDO B 401 |
| Chain | Residue |
| B | PHE18 |
| B | VAL127 |
| B | GLY128 |
| site_id | AE2 |
| Number of Residues | 4 |
| Details | binding site for residue EDO B 402 |
| Chain | Residue |
| B | ILE10 |
| B | GLY11 |
| B | EDO403 |
| B | CL417 |
| site_id | AE3 |
| Number of Residues | 4 |
| Details | binding site for residue EDO B 403 |
| Chain | Residue |
| B | GLY11 |
| B | GLN13 |
| B | EDO402 |
| B | HOH867 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue EDO B 404 |
| Chain | Residue |
| B | GLU184 |
| B | HOH545 |
| B | HOH620 |
| B | HOH862 |
| site_id | AE5 |
| Number of Residues | 6 |
| Details | binding site for residue EDO B 405 |
| Chain | Residue |
| B | ASN25 |
| B | SER49 |
| B | ASP50 |
| B | THR202 |
| B | HOH506 |
| B | HOH818 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue EDO B 406 |
| Chain | Residue |
| A | THR69 |
| B | PG4414 |
| site_id | AE7 |
| Number of Residues | 6 |
| Details | binding site for residue EDO B 407 |
| Chain | Residue |
| A | PG4417 |
| B | THR69 |
| B | GLU72 |
| B | LYS97 |
| B | HOH580 |
| B | HOH617 |
| site_id | AE8 |
| Number of Residues | 6 |
| Details | binding site for residue PEG B 408 |
| Chain | Residue |
| B | THR5 |
| B | ASN6 |
| B | LEU7 |
| B | GLU8 |
| B | HOH504 |
| B | HOH609 |
| site_id | AE9 |
| Number of Residues | 7 |
| Details | binding site for residue PEG B 409 |
| Chain | Residue |
| B | THR167 |
| B | THR266 |
| B | ILE267 |
| B | GLY268 |
| B | LYS307 |
| B | HOH517 |
| B | HOH772 |
| site_id | AF1 |
| Number of Residues | 7 |
| Details | binding site for residue PGE B 410 |
| Chain | Residue |
| B | SER16 |
| B | PHE18 |
| B | GLU54 |
| B | PHE56 |
| B | GLY57 |
| B | GLY130 |
| B | HOH547 |
| site_id | AF2 |
| Number of Residues | 6 |
| Details | binding site for residue PGE B 411 |
| Chain | Residue |
| B | HIS104 |
| B | MET105 |
| B | SER107 |
| B | TRP108 |
| B | HOH744 |
| B | HOH775 |
| site_id | AF3 |
| Number of Residues | 7 |
| Details | binding site for residue PGE B 412 |
| Chain | Residue |
| A | SER107 |
| A | HOH584 |
| B | TRP39 |
| B | TRP108 |
| B | HOH648 |
| B | HOH754 |
| B | HOH771 |
| site_id | AF4 |
| Number of Residues | 7 |
| Details | binding site for residue PG4 B 413 |
| Chain | Residue |
| B | ARG87 |
| B | GLY131 |
| B | SER132 |
| B | ASP133 |
| B | ASP135 |
| B | HOH549 |
| B | HOH769 |
| site_id | AF5 |
| Number of Residues | 5 |
| Details | binding site for residue PG4 B 414 |
| Chain | Residue |
| B | LYS31 |
| B | TRP47 |
| B | EDO406 |
| B | HOH654 |
| B | HOH675 |
| site_id | AF6 |
| Number of Residues | 5 |
| Details | binding site for residue PG4 B 415 |
| Chain | Residue |
| A | LYS191 |
| B | PRO70 |
| B | ASN96 |
| B | LYS97 |
| B | HOH580 |
| site_id | AF7 |
| Number of Residues | 9 |
| Details | binding site for residue PG4 B 416 |
| Chain | Residue |
| A | EDO401 |
| B | SER76 |
| B | LEU77 |
| B | TRP80 |
| B | LYS92 |
| B | LYS94 |
| B | GLU100 |
| B | PHE102 |
| B | GLU113 |
| site_id | AF8 |
| Number of Residues | 6 |
| Details | binding site for residue CL B 417 |
| Chain | Residue |
| B | GLY81 |
| B | ASN82 |
| B | GLY83 |
| B | GLY85 |
| B | EDO402 |
| B | HOH845 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 278 |
| Details | Domain: {"description":"Jacalin-type lectin","evidences":[{"source":"PROSITE-ProRule","id":"PRU01088","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"26711430","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ZNQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ZNR","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
