5DF1
Iridoid synthase from Catharanthus roseus - ternary complex with NADP+ and geranic acid
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006720 | biological_process | isoprenoid metabolic process |
| A | 0016099 | biological_process | monoterpenoid biosynthetic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016628 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042803 | molecular_function | protein homodimerization activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006720 | biological_process | isoprenoid metabolic process |
| B | 0016099 | biological_process | monoterpenoid biosynthetic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016628 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042803 | molecular_function | protein homodimerization activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 29 |
| Details | binding site for residue NAP A 900 |
| Chain | Residue |
| A | GLY36 |
| A | VAL85 |
| A | SER108 |
| A | TRP109 |
| A | MET121 |
| A | GLN142 |
| A | THR143 |
| A | TYR178 |
| A | PRO201 |
| A | ALA202 |
| A | VAL204 |
| A | THR38 |
| A | SER211 |
| A | MET212 |
| A | MET213 |
| A | 58X901 |
| A | HOH1001 |
| A | HOH1028 |
| A | HOH1061 |
| A | HOH1075 |
| A | HOH1119 |
| A | HOH1130 |
| A | GLY39 |
| A | ILE40 |
| A | ALA65 |
| A | ARG66 |
| A | ARG67 |
| A | CYS83 |
| A | ASP84 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue 58X A 901 |
| Chain | Residue |
| A | GLY144 |
| A | ILE145 |
| A | LYS146 |
| A | TYR178 |
| A | PHE342 |
| A | ALA346 |
| A | NAP900 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 902 |
| Chain | Residue |
| A | HIS147 |
| A | ARG171 |
| A | GLU182 |
| A | ARG200 |
| A | HOH1003 |
| A | HOH1007 |
| A | HOH1029 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue IMD A 903 |
| Chain | Residue |
| A | CYS226 |
| A | GLU229 |
| A | MET313 |
| A | HOH1038 |
| A | HOH1137 |
| A | HOH1146 |
| site_id | AC5 |
| Number of Residues | 30 |
| Details | binding site for residue NAP B 900 |
| Chain | Residue |
| B | GLY36 |
| B | VAL37 |
| B | THR38 |
| B | GLY39 |
| B | ILE40 |
| B | ALA65 |
| B | ARG66 |
| B | ARG67 |
| B | CYS83 |
| B | ASP84 |
| B | VAL85 |
| B | SER108 |
| B | TRP109 |
| B | MET121 |
| B | GLN142 |
| B | THR143 |
| B | TYR178 |
| B | PRO201 |
| B | ALA202 |
| B | VAL204 |
| B | SER211 |
| B | MET212 |
| B | MET213 |
| B | 58X901 |
| B | HOH1004 |
| B | HOH1016 |
| B | HOH1018 |
| B | HOH1020 |
| B | HOH1032 |
| B | HOH1075 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue 58X B 901 |
| Chain | Residue |
| B | GLY144 |
| B | ILE145 |
| B | LYS146 |
| B | TYR178 |
| B | ALA346 |
| B | SER349 |
| B | NAP900 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue EDO B 902 |
| Chain | Residue |
| B | HIS147 |
| B | ARG171 |
| B | GLU182 |
| B | ARG200 |
| B | HOH1002 |
| B | HOH1008 |
| B | HOH1009 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue EDO B 903 |
| Chain | Residue |
| B | HOH1027 |
| B | HOH1045 |
| A | SER376 |
| B | SER86 |
| B | ASN87 |
| B | ASN88 |
| B | THR120 |
| B | ASN124 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue EDO B 904 |
| Chain | Residue |
| B | GLU47 |
| B | ASP252 |
| B | LYS380 |
| B | HOH1001 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue EDO B 905 |
| Chain | Residue |
| B | HOH1031 |
| B | HOH1122 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: ACT_SITE => ECO:0000269|PubMed:26768532 |
| Chain | Residue | Details |
| A | LYS146 | |
| A | TYR178 | |
| B | LYS146 | |
| B | TYR178 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 14 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:26551396, ECO:0000269|PubMed:26768532, ECO:0000269|PubMed:26868105, ECO:0007744|PDB:5COB, ECO:0007744|PDB:5DBF, ECO:0007744|PDB:5DF1 |
| Chain | Residue | Details |
| A | THR38 | |
| B | ASP84 | |
| B | SER108 | |
| B | GLN142 | |
| B | VAL204 | |
| B | SER211 | |
| A | ARG66 | |
| A | ASP84 | |
| A | SER108 | |
| A | GLN142 | |
| A | VAL204 | |
| A | SER211 | |
| B | THR38 | |
| B | ARG66 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:26768532, ECO:0007744|PDB:5DBI |
| Chain | Residue | Details |
| A | LYS146 | |
| B | LYS146 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:26768532, ECO:0000269|PubMed:26868105, ECO:0007744|PDB:5COB, ECO:0007744|PDB:5DBI |
| Chain | Residue | Details |
| A | TYR178 | |
| B | TYR178 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:26768532, ECO:0000269|PubMed:26868105, ECO:0007744|PDB:5COB |
| Chain | Residue | Details |
| A | SER349 | |
| B | SER349 |
