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5DEU

Crystal structure of TET2-5hmC complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0006211biological_process5-methylcytosine catabolic process
A0070579molecular_function5-methylcytosine dioxygenase activity
A0080111biological_processDNA demethylation
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue OGA A 2001
ChainResidue
AARG1261
AFE2003
AHOH2113
B5HC6
ACYS1374
AHIS1382
AASP1384
AHIS1416
AHIS1881
ATHR1883
AARG1896
ASER1898

site_idAC2
Number of Residues8
Detailsbinding site for residue MES A 2002
ChainResidue
AGLU1186
AALA1381
AHIS1382
AARG1383
ALEU1385
ALEU1880
AHOH2111
CDG11

site_idAC3
Number of Residues5
Detailsbinding site for residue FE A 2003
ChainResidue
AHIS1382
AASP1384
AHIS1881
AOGA2001
AHOH2113

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 2004
ChainResidue
ACYS1133
ACYS1135
AHIS1219
ACYS1221

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 2005
ChainResidue
ACYS1193
ACYS1271
ACYS1273
AHIS1380

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 2006
ChainResidue
ACYS1289
ACYS1298
ACYS1358
AHIS1912

site_idAC7
Number of Residues5
Detailsbinding site for residue CL A 2007
ChainResidue
AASN1387
ASER1392
ATHR1393
AALA1876
ALYS1877

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues21
DetailsBINDING: BINDING => ECO:0000269|PubMed:24315485
ChainResidueDetails
ACYS1133
ACYS1298
ACYS1358
ACYS1374
AHIS1380
AHIS1382
AASP1384
AASN1387
AHIS1416
AHIS1881
AARG1896
ACYS1135
ATYR1902
AHIS1912
ACYS1193
AHIS1219
ACYS1221
AARG1261
ACYS1271
ACYS1273
ACYS1289

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25557551
ChainResidueDetails
ALYS1299

218853

PDB entries from 2024-04-24

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